Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12755 and HMPREF1058_RS12750 are separated by 77 nucleotides
HMPREF1058_RS12755: HMPREF1058_RS12755 - hypothetical protein, at 38,292 to 41,141
_RS12755
HMPREF1058_RS12750: HMPREF1058_RS12750 - helix-turn-helix transcriptional regulator, at 41,219 to 41,707
_RS12750
Position (kb) 41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 40.222 kb on + strand, within HMPREF1058_RS12755 at 40.222 kb on + strand, within HMPREF1058_RS12755 at 40.222 kb on + strand, within HMPREF1058_RS12755 at 40.223 kb on - strand, within HMPREF1058_RS12755 at 40.223 kb on - strand, within HMPREF1058_RS12755 at 40.230 kb on - strand, within HMPREF1058_RS12755 at 40.256 kb on + strand, within HMPREF1058_RS12755 at 40.257 kb on - strand, within HMPREF1058_RS12755 at 40.303 kb on + strand, within HMPREF1058_RS12755 at 40.337 kb on - strand, within HMPREF1058_RS12755 at 40.388 kb on + strand, within HMPREF1058_RS12755 at 40.389 kb on + strand, within HMPREF1058_RS12755 at 40.480 kb on + strand, within HMPREF1058_RS12755 at 40.481 kb on - strand, within HMPREF1058_RS12755 at 40.481 kb on - strand, within HMPREF1058_RS12755 at 40.488 kb on - strand, within HMPREF1058_RS12755 at 40.494 kb on - strand, within HMPREF1058_RS12755 at 40.494 kb on - strand, within HMPREF1058_RS12755 at 40.575 kb on - strand, within HMPREF1058_RS12755 at 40.603 kb on - strand, within HMPREF1058_RS12755 at 40.623 kb on + strand, within HMPREF1058_RS12755 at 40.688 kb on - strand, within HMPREF1058_RS12755 at 40.772 kb on - strand, within HMPREF1058_RS12755 at 40.859 kb on + strand at 40.956 kb on - strand at 41.059 kb on + strand at 41.216 kb on + strand at 41.220 kb on + strand at 41.463 kb on + strand, within HMPREF1058_RS12750 at 41.526 kb on - strand, within HMPREF1058_RS12750 at 41.552 kb on + strand, within HMPREF1058_RS12750 at 41.553 kb on - strand, within HMPREF1058_RS12750 at 41.555 kb on - strand, within HMPREF1058_RS12750 at 41.560 kb on + strand, within HMPREF1058_RS12750 at 41.561 kb on - strand, within HMPREF1058_RS12750 at 41.561 kb on - strand, within HMPREF1058_RS12750 at 41.561 kb on - strand, within HMPREF1058_RS12750 at 41.562 kb on + strand, within HMPREF1058_RS12750 at 41.563 kb on - strand, within HMPREF1058_RS12750 at 41.563 kb on - strand, within HMPREF1058_RS12750 at 41.564 kb on + strand, within HMPREF1058_RS12750 at 41.714 kb on + strand at 41.715 kb on - strand at 41.715 kb on - strand at 41.734 kb on - strand at 41.734 kb on - strand at 41.756 kb on + strand at 41.763 kb on + strand at 41.765 kb on + strand at 41.765 kb on + strand at 41.766 kb on - strand at 41.808 kb on - strand at 41.838 kb on + strand at 41.885 kb on - strand at 42.001 kb on + strand at 42.002 kb on - strand at 42.003 kb on + strand at 42.004 kb on - strand at 42.005 kb on + strand at 42.062 kb on + strand at 42.064 kb on + strand at 42.164 kb on + strand at 42.204 kb on + strand at 42.211 kb on - strand at 42.211 kb on - strand at 42.229 kb on + strand at 42.229 kb on + strand at 42.240 kb on + strand at 42.414 kb on - strand at 42.469 kb on - strand at 42.534 kb on + strand at 42.534 kb on + strand at 42.534 kb on + strand at 42.535 kb on - strand at 42.550 kb on + strand at 42.550 kb on + strand at 42.557 kb on + strand at 42.557 kb on + strand at 42.558 kb on - strand at 42.559 kb on + strand at 42.559 kb on + strand at 42.591 kb on + strand at 42.591 kb on + strand at 42.592 kb on - strand at 42.593 kb on + strand at 42.593 kb on + strand at 42.594 kb on - strand at 42.594 kb on - strand at 42.594 kb on - strand at 42.625 kb on + strand at 42.626 kb on - strand at 42.638 kb on + strand at 42.639 kb on - strand at 42.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 40,222 + HMPREF1058_RS12755 0.68 +1.2 40,222 + HMPREF1058_RS12755 0.68 -0.6 40,222 + HMPREF1058_RS12755 0.68 +0.3 40,223 - HMPREF1058_RS12755 0.68 -0.4 40,223 - HMPREF1058_RS12755 0.68 +2.2 40,230 - HMPREF1058_RS12755 0.68 +1.3 40,256 + HMPREF1058_RS12755 0.69 -0.6 40,257 - HMPREF1058_RS12755 0.69 -2.5 40,303 + HMPREF1058_RS12755 0.71 -0.0 40,337 - HMPREF1058_RS12755 0.72 -0.3 40,388 + HMPREF1058_RS12755 0.74 -0.9 40,389 + HMPREF1058_RS12755 0.74 +0.1 40,480 + HMPREF1058_RS12755 0.77 -0.3 40,481 - HMPREF1058_RS12755 0.77 -2.2 40,481 - HMPREF1058_RS12755 0.77 -0.1 40,488 - HMPREF1058_RS12755 0.77 -1.0 40,494 - HMPREF1058_RS12755 0.77 -3.3 40,494 - HMPREF1058_RS12755 0.77 +0.5 40,575 - HMPREF1058_RS12755 0.80 +0.7 40,603 - HMPREF1058_RS12755 0.81 -0.4 40,623 + HMPREF1058_RS12755 0.82 -0.0 40,688 - HMPREF1058_RS12755 0.84 -3.2 40,772 - HMPREF1058_RS12755 0.87 +0.2 40,859 + -0.4 40,956 - -0.8 41,059 + +0.7 41,216 + -0.2 41,220 + +0.5 41,463 + HMPREF1058_RS12750 0.50 -1.2 41,526 - HMPREF1058_RS12750 0.63 -2.7 41,552 + HMPREF1058_RS12750 0.68 +0.1 41,553 - HMPREF1058_RS12750 0.68 -0.7 41,555 - HMPREF1058_RS12750 0.69 -1.5 41,560 + HMPREF1058_RS12750 0.70 -1.4 41,561 - HMPREF1058_RS12750 0.70 -2.9 41,561 - HMPREF1058_RS12750 0.70 -3.5 41,561 - HMPREF1058_RS12750 0.70 -2.3 41,562 + HMPREF1058_RS12750 0.70 -0.3 41,563 - HMPREF1058_RS12750 0.70 -3.5 41,563 - HMPREF1058_RS12750 0.70 -0.5 41,564 + HMPREF1058_RS12750 0.71 +0.5 41,714 + +0.5 41,715 - -1.4 41,715 - -3.1 41,734 - -3.4 41,734 - +0.1 41,756 + -1.2 41,763 + -1.5 41,765 + -0.9 41,765 + +0.8 41,766 - -3.3 41,808 - -1.3 41,838 + -1.6 41,885 - -2.9 42,001 + -1.7 42,002 - +0.8 42,003 + -1.7 42,004 - -0.1 42,005 + -3.5 42,062 + -0.3 42,064 + -1.2 42,164 + -0.1 42,204 + -2.7 42,211 - -1.8 42,211 - -3.5 42,229 + -0.5 42,229 + -1.0 42,240 + +0.6 42,414 - +1.1 42,469 - +0.4 42,534 + -2.8 42,534 + +0.5 42,534 + +0.8 42,535 - +0.1 42,550 + -1.5 42,550 + +1.1 42,557 + -0.4 42,557 + +1.8 42,558 - +3.8 42,559 + +2.1 42,559 + +0.7 42,591 + +1.7 42,591 + -0.3 42,592 - -0.8 42,593 + +0.2 42,593 + -0.6 42,594 - -0.5 42,594 - +0.2 42,594 - -1.4 42,625 + -0.7 42,626 - +1.9 42,638 + +1.3 42,639 - -0.5 42,663 + -0.5
Or see this region's nucleotide sequence