Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11695 and HMPREF1058_RS11690 are separated by 58 nucleotides HMPREF1058_RS11690 and HMPREF1058_RS11685 overlap by 4 nucleotides
HMPREF1058_RS11695: HMPREF1058_RS11695 - tRNA-dihydrouridine synthase family protein, at 314,334 to 315,251
_RS11695
HMPREF1058_RS11690: HMPREF1058_RS11690 - acyl-CoA thioesterase, at 315,310 to 315,717
_RS11690
HMPREF1058_RS11685: HMPREF1058_RS11685 - DNA-protecting protein DprA, at 315,714 to 316,829
_RS11685
Position (kb) 315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 314.313 kb on - strand at 314.313 kb on - strand at 314.313 kb on - strand at 314.313 kb on - strand at 314.359 kb on + strand at 314.426 kb on - strand, within HMPREF1058_RS11695 at 314.472 kb on + strand, within HMPREF1058_RS11695 at 314.678 kb on + strand, within HMPREF1058_RS11695 at 314.680 kb on + strand, within HMPREF1058_RS11695 at 314.680 kb on + strand, within HMPREF1058_RS11695 at 314.681 kb on - strand, within HMPREF1058_RS11695 at 314.707 kb on + strand, within HMPREF1058_RS11695 at 314.945 kb on + strand, within HMPREF1058_RS11695 at 315.163 kb on + strand at 315.171 kb on + strand at 315.171 kb on + strand at 315.172 kb on - strand at 315.172 kb on - strand at 315.172 kb on - strand at 315.241 kb on + strand at 315.272 kb on - strand at 315.297 kb on - strand at 315.299 kb on - strand at 315.321 kb on + strand at 315.352 kb on + strand, within HMPREF1058_RS11690 at 315.392 kb on - strand, within HMPREF1058_RS11690 at 315.400 kb on + strand, within HMPREF1058_RS11690 at 315.551 kb on - strand, within HMPREF1058_RS11690 at 315.567 kb on + strand, within HMPREF1058_RS11690 at 315.568 kb on - strand, within HMPREF1058_RS11690 at 315.570 kb on + strand, within HMPREF1058_RS11690 at 315.571 kb on - strand, within HMPREF1058_RS11690 at 315.574 kb on + strand, within HMPREF1058_RS11690 at 315.575 kb on - strand, within HMPREF1058_RS11690 at 315.584 kb on - strand, within HMPREF1058_RS11690 at 315.635 kb on + strand, within HMPREF1058_RS11690 at 315.635 kb on + strand, within HMPREF1058_RS11690 at 315.636 kb on - strand, within HMPREF1058_RS11690 at 315.644 kb on + strand, within HMPREF1058_RS11690 at 315.890 kb on + strand, within HMPREF1058_RS11685 at 315.926 kb on - strand, within HMPREF1058_RS11685 at 316.068 kb on - strand, within HMPREF1058_RS11685 at 316.231 kb on + strand, within HMPREF1058_RS11685 at 316.263 kb on + strand, within HMPREF1058_RS11685
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 314,313 - +0.1 314,313 - +0.2 314,313 - -0.1 314,313 - -0.8 314,359 + -2.1 314,426 - HMPREF1058_RS11695 0.10 -2.0 314,472 + HMPREF1058_RS11695 0.15 +2.3 314,678 + HMPREF1058_RS11695 0.37 -0.5 314,680 + HMPREF1058_RS11695 0.38 -0.2 314,680 + HMPREF1058_RS11695 0.38 -1.7 314,681 - HMPREF1058_RS11695 0.38 -0.3 314,707 + HMPREF1058_RS11695 0.41 +0.2 314,945 + HMPREF1058_RS11695 0.67 +3.4 315,163 + -1.7 315,171 + +0.5 315,171 + +1.0 315,172 - -0.6 315,172 - +0.1 315,172 - -0.1 315,241 + -1.7 315,272 - -2.3 315,297 - -0.2 315,299 - +0.4 315,321 + +1.4 315,352 + HMPREF1058_RS11690 0.10 +0.2 315,392 - HMPREF1058_RS11690 0.20 +1.7 315,400 + HMPREF1058_RS11690 0.22 -0.9 315,551 - HMPREF1058_RS11690 0.59 +6.1 315,567 + HMPREF1058_RS11690 0.63 -0.1 315,568 - HMPREF1058_RS11690 0.63 +1.2 315,570 + HMPREF1058_RS11690 0.64 +0.6 315,571 - HMPREF1058_RS11690 0.64 +0.0 315,574 + HMPREF1058_RS11690 0.65 -1.0 315,575 - HMPREF1058_RS11690 0.65 -3.5 315,584 - HMPREF1058_RS11690 0.67 -0.1 315,635 + HMPREF1058_RS11690 0.80 +0.2 315,635 + HMPREF1058_RS11690 0.80 +0.1 315,636 - HMPREF1058_RS11690 0.80 +1.0 315,644 + HMPREF1058_RS11690 0.82 -1.0 315,890 + HMPREF1058_RS11685 0.16 -1.6 315,926 - HMPREF1058_RS11685 0.19 -0.2 316,068 - HMPREF1058_RS11685 0.32 -0.7 316,231 + HMPREF1058_RS11685 0.46 -3.4 316,263 + HMPREF1058_RS11685 0.49 -1.6
Or see this region's nucleotide sequence