Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10910 and HMPREF1058_RS10905 are separated by 86 nucleotides HMPREF1058_RS10905 and HMPREF1058_RS10900 are separated by 36 nucleotides
HMPREF1058_RS10910: HMPREF1058_RS10910 - glycosyltransferase family 39 protein, at 531,773 to 533,497
_RS10910
HMPREF1058_RS10905: HMPREF1058_RS10905 - GtrA family protein, at 533,584 to 533,958
_RS10905
HMPREF1058_RS10900: HMPREF1058_RS10900 - glycosyltransferase, at 533,995 to 534,942
_RS10900
Position (kb) 533
534 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 532.705 kb on + strand, within HMPREF1058_RS10910 at 532.705 kb on + strand, within HMPREF1058_RS10910 at 532.705 kb on + strand, within HMPREF1058_RS10910 at 532.706 kb on - strand, within HMPREF1058_RS10910 at 532.706 kb on - strand, within HMPREF1058_RS10910 at 532.942 kb on + strand, within HMPREF1058_RS10910 at 532.943 kb on - strand, within HMPREF1058_RS10910 at 532.943 kb on - strand, within HMPREF1058_RS10910 at 532.955 kb on - strand, within HMPREF1058_RS10910 at 532.955 kb on - strand, within HMPREF1058_RS10910 at 533.176 kb on + strand, within HMPREF1058_RS10910 at 533.177 kb on - strand, within HMPREF1058_RS10910 at 533.217 kb on - strand, within HMPREF1058_RS10910 at 533.290 kb on + strand, within HMPREF1058_RS10910 at 533.413 kb on - strand at 533.444 kb on + strand at 533.445 kb on - strand at 533.445 kb on - strand at 533.515 kb on - strand at 533.517 kb on - strand at 533.549 kb on - strand at 533.631 kb on - strand, within HMPREF1058_RS10905 at 533.631 kb on - strand, within HMPREF1058_RS10905 at 533.699 kb on + strand, within HMPREF1058_RS10905 at 533.699 kb on + strand, within HMPREF1058_RS10905 at 533.700 kb on - strand, within HMPREF1058_RS10905 at 533.704 kb on + strand, within HMPREF1058_RS10905 at 533.705 kb on - strand, within HMPREF1058_RS10905 at 533.716 kb on + strand, within HMPREF1058_RS10905 at 533.756 kb on - strand, within HMPREF1058_RS10905 at 533.761 kb on - strand, within HMPREF1058_RS10905 at 533.825 kb on - strand, within HMPREF1058_RS10905 at 533.831 kb on + strand, within HMPREF1058_RS10905 at 533.956 kb on + strand at 534.026 kb on - strand at 534.026 kb on - strand at 534.139 kb on - strand, within HMPREF1058_RS10900 at 534.187 kb on + strand, within HMPREF1058_RS10900 at 534.188 kb on - strand, within HMPREF1058_RS10900 at 534.222 kb on - strand, within HMPREF1058_RS10900 at 534.337 kb on + strand, within HMPREF1058_RS10900 at 534.419 kb on + strand, within HMPREF1058_RS10900 at 534.444 kb on + strand, within HMPREF1058_RS10900 at 534.445 kb on - strand, within HMPREF1058_RS10900 at 534.681 kb on + strand, within HMPREF1058_RS10900 at 534.723 kb on - strand, within HMPREF1058_RS10900 at 534.760 kb on + strand, within HMPREF1058_RS10900 at 534.813 kb on - strand, within HMPREF1058_RS10900 at 534.843 kb on + strand, within HMPREF1058_RS10900 at 534.854 kb on - strand at 534.892 kb on - strand at 534.895 kb on + strand at 534.896 kb on - strand at 534.899 kb on + strand at 534.900 kb on - strand at 534.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 532,705 + HMPREF1058_RS10910 0.54 -4.3 532,705 + HMPREF1058_RS10910 0.54 -3.0 532,705 + HMPREF1058_RS10910 0.54 -4.0 532,706 - HMPREF1058_RS10910 0.54 -3.0 532,706 - HMPREF1058_RS10910 0.54 -2.0 532,942 + HMPREF1058_RS10910 0.68 -2.4 532,943 - HMPREF1058_RS10910 0.68 -3.1 532,943 - HMPREF1058_RS10910 0.68 -2.1 532,955 - HMPREF1058_RS10910 0.69 -1.9 532,955 - HMPREF1058_RS10910 0.69 -3.1 533,176 + HMPREF1058_RS10910 0.81 -2.5 533,177 - HMPREF1058_RS10910 0.81 -4.2 533,217 - HMPREF1058_RS10910 0.84 -3.0 533,290 + HMPREF1058_RS10910 0.88 -1.0 533,413 - -4.4 533,444 + -4.2 533,445 - -4.2 533,445 - -1.9 533,515 - +0.8 533,517 - +0.8 533,549 - -0.8 533,631 - HMPREF1058_RS10905 0.13 -1.6 533,631 - HMPREF1058_RS10905 0.13 -1.1 533,699 + HMPREF1058_RS10905 0.31 +2.2 533,699 + HMPREF1058_RS10905 0.31 -0.2 533,700 - HMPREF1058_RS10905 0.31 +0.4 533,704 + HMPREF1058_RS10905 0.32 -0.5 533,705 - HMPREF1058_RS10905 0.32 -2.3 533,716 + HMPREF1058_RS10905 0.35 -1.0 533,756 - HMPREF1058_RS10905 0.46 -2.9 533,761 - HMPREF1058_RS10905 0.47 -1.0 533,825 - HMPREF1058_RS10905 0.64 -0.7 533,831 + HMPREF1058_RS10905 0.66 +0.4 533,956 + +3.1 534,026 - -2.7 534,026 - -0.9 534,139 - HMPREF1058_RS10900 0.15 +0.2 534,187 + HMPREF1058_RS10900 0.20 -3.3 534,188 - HMPREF1058_RS10900 0.20 -1.2 534,222 - HMPREF1058_RS10900 0.24 -0.3 534,337 + HMPREF1058_RS10900 0.36 -3.7 534,419 + HMPREF1058_RS10900 0.45 -3.2 534,444 + HMPREF1058_RS10900 0.47 -3.2 534,445 - HMPREF1058_RS10900 0.47 -3.0 534,681 + HMPREF1058_RS10900 0.72 -4.6 534,723 - HMPREF1058_RS10900 0.77 -3.8 534,760 + HMPREF1058_RS10900 0.81 +0.8 534,813 - HMPREF1058_RS10900 0.86 -3.0 534,843 + HMPREF1058_RS10900 0.89 -0.8 534,854 - -2.6 534,892 - -3.4 534,895 + -2.9 534,896 - -2.2 534,899 + -2.0 534,900 - -2.9 534,913 - -2.2
Or see this region's nucleotide sequence