Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06985 and HMPREF1058_RS06980 are separated by 531 nucleotides HMPREF1058_RS06980 and HMPREF1058_RS0119755 are separated by 1 nucleotides HMPREF1058_RS0119755 and HMPREF1058_RS06975 are separated by 12 nucleotides
HMPREF1058_RS06985: HMPREF1058_RS06985 - glycosyltransferase family 2 protein, at 343,095 to 343,913
_RS06985
HMPREF1058_RS06980: HMPREF1058_RS06980 - sugar transferase, at 344,445 to 345,074
_RS06980
HMPREF1058_RS0119755: HMPREF1058_RS0119755 - hypothetical protein, at 345,076 to 345,627
_RS0119755
HMPREF1058_RS06975: HMPREF1058_RS06975 - hypothetical protein, at 345,640 to 346,059
_RS06975
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 343.477 kb on + strand, within HMPREF1058_RS06985 at 343.617 kb on - strand, within HMPREF1058_RS06985 at 343.677 kb on + strand, within HMPREF1058_RS06985 at 343.677 kb on + strand, within HMPREF1058_RS06985 at 343.678 kb on - strand, within HMPREF1058_RS06985 at 343.696 kb on + strand, within HMPREF1058_RS06985 at 343.697 kb on - strand, within HMPREF1058_RS06985 at 343.732 kb on - strand, within HMPREF1058_RS06985 at 343.801 kb on - strand, within HMPREF1058_RS06985 at 343.925 kb on + strand at 344.019 kb on - strand at 344.084 kb on - strand at 344.094 kb on - strand at 344.098 kb on - strand at 344.106 kb on + strand at 344.106 kb on + strand at 344.107 kb on - strand at 344.269 kb on - strand at 344.292 kb on - strand at 344.311 kb on + strand at 344.368 kb on - strand at 344.410 kb on + strand at 344.528 kb on - strand, within HMPREF1058_RS06980 at 344.652 kb on + strand, within HMPREF1058_RS06980 at 344.655 kb on - strand, within HMPREF1058_RS06980 at 344.658 kb on + strand, within HMPREF1058_RS06980 at 344.658 kb on + strand, within HMPREF1058_RS06980 at 344.659 kb on - strand, within HMPREF1058_RS06980 at 344.659 kb on - strand, within HMPREF1058_RS06980 at 344.659 kb on - strand, within HMPREF1058_RS06980 at 344.659 kb on - strand, within HMPREF1058_RS06980 at 345.050 kb on + strand at 345.051 kb on - strand at 345.180 kb on - strand, within HMPREF1058_RS0119755 at 345.256 kb on + strand, within HMPREF1058_RS0119755 at 345.278 kb on + strand, within HMPREF1058_RS0119755 at 345.326 kb on - strand, within HMPREF1058_RS0119755 at 345.414 kb on + strand, within HMPREF1058_RS0119755 at 345.460 kb on + strand, within HMPREF1058_RS0119755 at 345.462 kb on + strand at 345.637 kb on + strand at 345.638 kb on - strand at 345.709 kb on - strand, within HMPREF1058_RS06975 at 345.736 kb on - strand, within HMPREF1058_RS06975 at 345.840 kb on - strand, within HMPREF1058_RS06975 at 345.871 kb on - strand, within HMPREF1058_RS06975 at 345.872 kb on + strand, within HMPREF1058_RS06975 at 345.873 kb on - strand, within HMPREF1058_RS06975 at 345.958 kb on + strand, within HMPREF1058_RS06975 at 346.073 kb on + strand at 346.073 kb on + strand at 346.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 343,477 + HMPREF1058_RS06985 0.47 -0.4 343,617 - HMPREF1058_RS06985 0.64 -2.0 343,677 + HMPREF1058_RS06985 0.71 +0.0 343,677 + HMPREF1058_RS06985 0.71 -1.2 343,678 - HMPREF1058_RS06985 0.71 -0.4 343,696 + HMPREF1058_RS06985 0.73 -2.9 343,697 - HMPREF1058_RS06985 0.74 -0.2 343,732 - HMPREF1058_RS06985 0.78 +1.1 343,801 - HMPREF1058_RS06985 0.86 -0.4 343,925 + -0.7 344,019 - -0.5 344,084 - -0.8 344,094 - +0.8 344,098 - -2.1 344,106 + -0.7 344,106 + +0.1 344,107 - -1.7 344,269 - -0.7 344,292 - -0.3 344,311 + +0.7 344,368 - +0.1 344,410 + -1.0 344,528 - HMPREF1058_RS06980 0.13 -0.6 344,652 + HMPREF1058_RS06980 0.33 -1.5 344,655 - HMPREF1058_RS06980 0.33 +2.4 344,658 + HMPREF1058_RS06980 0.34 -0.9 344,658 + HMPREF1058_RS06980 0.34 +2.4 344,659 - HMPREF1058_RS06980 0.34 +0.6 344,659 - HMPREF1058_RS06980 0.34 +0.0 344,659 - HMPREF1058_RS06980 0.34 +0.6 344,659 - HMPREF1058_RS06980 0.34 -0.4 345,050 + -1.7 345,051 - +0.1 345,180 - HMPREF1058_RS0119755 0.19 -0.6 345,256 + HMPREF1058_RS0119755 0.33 -0.7 345,278 + HMPREF1058_RS0119755 0.37 -1.3 345,326 - HMPREF1058_RS0119755 0.45 -0.2 345,414 + HMPREF1058_RS0119755 0.61 -1.9 345,460 + HMPREF1058_RS0119755 0.70 +1.4 345,462 + +0.1 345,637 + +1.1 345,638 - -0.6 345,709 - HMPREF1058_RS06975 0.16 -0.7 345,736 - HMPREF1058_RS06975 0.23 -2.2 345,840 - HMPREF1058_RS06975 0.48 -1.6 345,871 - HMPREF1058_RS06975 0.55 +0.8 345,872 + HMPREF1058_RS06975 0.55 -2.3 345,873 - HMPREF1058_RS06975 0.55 +0.8 345,958 + HMPREF1058_RS06975 0.76 +0.4 346,073 + +0.4 346,073 + -1.9 346,074 - +0.4
Or see this region's nucleotide sequence