Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06360 and HMPREF1058_RS06355 are separated by 196 nucleotides HMPREF1058_RS06355 and HMPREF1058_RS06350 are separated by 178 nucleotides HMPREF1058_RS06350 and HMPREF1058_RS06345 are separated by 20 nucleotides
HMPREF1058_RS06360: HMPREF1058_RS06360 - DMT family transporter, at 498,955 to 499,869
_RS06360
HMPREF1058_RS06355: HMPREF1058_RS06355 - threonine ammonia-lyase, at 500,066 to 501,262
_RS06355
HMPREF1058_RS06350: HMPREF1058_RS06350 - SoxR reducing system RseC family protein, at 501,441 to 501,869
_RS06350
HMPREF1058_RS06345: HMPREF1058_RS06345 - Fe-S cluster domain-containing protein, at 501,890 to 502,843
_RS06345
Position (kb) 500
501
502 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 499.085 kb on + strand, within HMPREF1058_RS06360 at 499.116 kb on + strand, within HMPREF1058_RS06360 at 499.168 kb on - strand, within HMPREF1058_RS06360 at 499.182 kb on - strand, within HMPREF1058_RS06360 at 499.186 kb on - strand, within HMPREF1058_RS06360 at 499.190 kb on - strand, within HMPREF1058_RS06360 at 499.190 kb on - strand, within HMPREF1058_RS06360 at 499.190 kb on - strand, within HMPREF1058_RS06360 at 499.269 kb on + strand, within HMPREF1058_RS06360 at 499.269 kb on + strand, within HMPREF1058_RS06360 at 499.270 kb on - strand, within HMPREF1058_RS06360 at 499.270 kb on - strand, within HMPREF1058_RS06360 at 499.365 kb on - strand, within HMPREF1058_RS06360 at 499.383 kb on + strand, within HMPREF1058_RS06360 at 499.482 kb on - strand, within HMPREF1058_RS06360 at 499.508 kb on + strand, within HMPREF1058_RS06360 at 499.579 kb on - strand, within HMPREF1058_RS06360 at 499.579 kb on - strand, within HMPREF1058_RS06360 at 499.654 kb on + strand, within HMPREF1058_RS06360 at 499.658 kb on + strand, within HMPREF1058_RS06360 at 499.701 kb on - strand, within HMPREF1058_RS06360 at 499.718 kb on + strand, within HMPREF1058_RS06360 at 499.718 kb on + strand, within HMPREF1058_RS06360 at 499.719 kb on - strand, within HMPREF1058_RS06360 at 499.719 kb on - strand, within HMPREF1058_RS06360 at 499.829 kb on + strand at 499.842 kb on + strand at 499.867 kb on + strand at 499.922 kb on - strand at 499.997 kb on + strand at 500.061 kb on + strand at 500.061 kb on + strand at 500.065 kb on + strand at 500.065 kb on + strand at 500.066 kb on - strand at 500.066 kb on - strand at 500.071 kb on - strand at 500.087 kb on + strand at 500.165 kb on - strand at 500.225 kb on + strand, within HMPREF1058_RS06355 at 500.225 kb on + strand, within HMPREF1058_RS06355 at 500.225 kb on + strand, within HMPREF1058_RS06355 at 500.226 kb on - strand, within HMPREF1058_RS06355 at 500.228 kb on + strand, within HMPREF1058_RS06355 at 500.228 kb on + strand, within HMPREF1058_RS06355 at 500.368 kb on + strand, within HMPREF1058_RS06355 at 500.374 kb on + strand, within HMPREF1058_RS06355 at 500.429 kb on + strand, within HMPREF1058_RS06355 at 500.479 kb on + strand, within HMPREF1058_RS06355 at 500.528 kb on - strand, within HMPREF1058_RS06355 at 500.653 kb on - strand, within HMPREF1058_RS06355 at 500.654 kb on + strand, within HMPREF1058_RS06355 at 500.654 kb on + strand, within HMPREF1058_RS06355 at 500.695 kb on + strand, within HMPREF1058_RS06355 at 500.776 kb on + strand, within HMPREF1058_RS06355 at 500.790 kb on + strand, within HMPREF1058_RS06355 at 500.845 kb on + strand, within HMPREF1058_RS06355 at 500.845 kb on + strand, within HMPREF1058_RS06355 at 500.846 kb on - strand, within HMPREF1058_RS06355 at 500.929 kb on - strand, within HMPREF1058_RS06355 at 500.942 kb on - strand, within HMPREF1058_RS06355 at 501.031 kb on + strand, within HMPREF1058_RS06355 at 501.031 kb on + strand, within HMPREF1058_RS06355 at 501.032 kb on - strand, within HMPREF1058_RS06355 at 501.209 kb on - strand at 501.375 kb on + strand at 501.378 kb on - strand at 501.385 kb on - strand at 501.385 kb on - strand at 501.385 kb on - strand at 501.452 kb on - strand at 501.640 kb on - strand, within HMPREF1058_RS06350 at 501.710 kb on + strand, within HMPREF1058_RS06350 at 501.716 kb on - strand, within HMPREF1058_RS06350 at 501.719 kb on + strand, within HMPREF1058_RS06350 at 501.752 kb on - strand, within HMPREF1058_RS06350 at 501.801 kb on - strand, within HMPREF1058_RS06350 at 501.802 kb on + strand, within HMPREF1058_RS06350 at 501.802 kb on + strand, within HMPREF1058_RS06350 at 501.803 kb on - strand, within HMPREF1058_RS06350 at 501.803 kb on - strand, within HMPREF1058_RS06350 at 501.805 kb on - strand, within HMPREF1058_RS06350 at 501.805 kb on - strand, within HMPREF1058_RS06350 at 501.805 kb on - strand, within HMPREF1058_RS06350 at 501.809 kb on - strand, within HMPREF1058_RS06350 at 501.842 kb on + strand at 502.119 kb on + strand, within HMPREF1058_RS06345 at 502.120 kb on - strand, within HMPREF1058_RS06345 at 502.120 kb on - strand, within HMPREF1058_RS06345 at 502.155 kb on + strand, within HMPREF1058_RS06345 at 502.157 kb on - strand, within HMPREF1058_RS06345 at 502.222 kb on + strand, within HMPREF1058_RS06345
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 499,085 + HMPREF1058_RS06360 0.14 +0.4 499,116 + HMPREF1058_RS06360 0.18 +0.7 499,168 - HMPREF1058_RS06360 0.23 +0.3 499,182 - HMPREF1058_RS06360 0.25 -0.9 499,186 - HMPREF1058_RS06360 0.25 -1.9 499,190 - HMPREF1058_RS06360 0.26 -0.1 499,190 - HMPREF1058_RS06360 0.26 +0.2 499,190 - HMPREF1058_RS06360 0.26 +1.1 499,269 + HMPREF1058_RS06360 0.34 +0.3 499,269 + HMPREF1058_RS06360 0.34 +0.6 499,270 - HMPREF1058_RS06360 0.34 -1.3 499,270 - HMPREF1058_RS06360 0.34 +2.4 499,365 - HMPREF1058_RS06360 0.45 -0.2 499,383 + HMPREF1058_RS06360 0.47 +1.6 499,482 - HMPREF1058_RS06360 0.58 -1.7 499,508 + HMPREF1058_RS06360 0.60 -0.4 499,579 - HMPREF1058_RS06360 0.68 -1.5 499,579 - HMPREF1058_RS06360 0.68 -1.1 499,654 + HMPREF1058_RS06360 0.76 -1.5 499,658 + HMPREF1058_RS06360 0.77 -2.1 499,701 - HMPREF1058_RS06360 0.82 +0.6 499,718 + HMPREF1058_RS06360 0.83 -2.0 499,718 + HMPREF1058_RS06360 0.83 -1.4 499,719 - HMPREF1058_RS06360 0.83 -1.9 499,719 - HMPREF1058_RS06360 0.83 -0.6 499,829 + -0.5 499,842 + +2.6 499,867 + -0.6 499,922 - +2.4 499,997 + +0.3 500,061 + +1.6 500,061 + -0.9 500,065 + +0.7 500,065 + +1.9 500,066 - +1.3 500,066 - +0.9 500,071 - -0.6 500,087 + +1.2 500,165 - +0.9 500,225 + HMPREF1058_RS06355 0.13 -3.4 500,225 + HMPREF1058_RS06355 0.13 +1.4 500,225 + HMPREF1058_RS06355 0.13 +0.4 500,226 - HMPREF1058_RS06355 0.13 +1.4 500,228 + HMPREF1058_RS06355 0.14 +1.1 500,228 + HMPREF1058_RS06355 0.14 +1.0 500,368 + HMPREF1058_RS06355 0.25 +1.9 500,374 + HMPREF1058_RS06355 0.26 -0.6 500,429 + HMPREF1058_RS06355 0.30 +0.9 500,479 + HMPREF1058_RS06355 0.35 +1.7 500,528 - HMPREF1058_RS06355 0.39 -0.9 500,653 - HMPREF1058_RS06355 0.49 +0.9 500,654 + HMPREF1058_RS06355 0.49 +1.4 500,654 + HMPREF1058_RS06355 0.49 -1.3 500,695 + HMPREF1058_RS06355 0.53 +0.3 500,776 + HMPREF1058_RS06355 0.59 +1.6 500,790 + HMPREF1058_RS06355 0.60 -0.0 500,845 + HMPREF1058_RS06355 0.65 +2.8 500,845 + HMPREF1058_RS06355 0.65 +0.8 500,846 - HMPREF1058_RS06355 0.65 -0.1 500,929 - HMPREF1058_RS06355 0.72 +0.9 500,942 - HMPREF1058_RS06355 0.73 +0.2 501,031 + HMPREF1058_RS06355 0.81 +0.4 501,031 + HMPREF1058_RS06355 0.81 -2.0 501,032 - HMPREF1058_RS06355 0.81 -0.7 501,209 - +2.4 501,375 + -1.6 501,378 - +0.3 501,385 - +0.1 501,385 - -1.3 501,385 - -1.6 501,452 - +0.4 501,640 - HMPREF1058_RS06350 0.46 -1.6 501,710 + HMPREF1058_RS06350 0.63 -2.5 501,716 - HMPREF1058_RS06350 0.64 -2.1 501,719 + HMPREF1058_RS06350 0.65 -1.5 501,752 - HMPREF1058_RS06350 0.72 -0.4 501,801 - HMPREF1058_RS06350 0.84 -0.9 501,802 + HMPREF1058_RS06350 0.84 -0.7 501,802 + HMPREF1058_RS06350 0.84 -0.6 501,803 - HMPREF1058_RS06350 0.84 -1.1 501,803 - HMPREF1058_RS06350 0.84 -2.2 501,805 - HMPREF1058_RS06350 0.85 -3.3 501,805 - HMPREF1058_RS06350 0.85 -0.4 501,805 - HMPREF1058_RS06350 0.85 -0.3 501,809 - HMPREF1058_RS06350 0.86 -0.5 501,842 + -0.6 502,119 + HMPREF1058_RS06345 0.24 -1.7 502,120 - HMPREF1058_RS06345 0.24 -1.0 502,120 - HMPREF1058_RS06345 0.24 -2.3 502,155 + HMPREF1058_RS06345 0.28 -1.3 502,157 - HMPREF1058_RS06345 0.28 -1.6 502,222 + HMPREF1058_RS06345 0.35 -0.4
Or see this region's nucleotide sequence