Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05800 and HMPREF1058_RS05795 overlap by 54 nucleotides
HMPREF1058_RS05800: HMPREF1058_RS05800 - DUF4858 domain-containing protein, at 77,231 to 78,001
_RS05800
HMPREF1058_RS05795: HMPREF1058_RS05795 - DMT family protein, at 77,948 to 78,322
_RS05795
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 76.955 kb on + strand at 76.955 kb on + strand at 76.955 kb on + strand at 76.955 kb on + strand at 76.956 kb on - strand at 76.956 kb on - strand at 76.956 kb on - strand at 76.956 kb on - strand at 76.977 kb on + strand at 77.046 kb on + strand at 77.047 kb on - strand at 77.055 kb on - strand at 77.144 kb on - strand at 77.157 kb on - strand at 77.194 kb on - strand at 77.210 kb on - strand at 77.256 kb on + strand at 77.277 kb on + strand at 77.278 kb on - strand at 77.414 kb on - strand, within HMPREF1058_RS05800 at 77.415 kb on + strand, within HMPREF1058_RS05800 at 77.423 kb on - strand, within HMPREF1058_RS05800 at 77.527 kb on + strand, within HMPREF1058_RS05800 at 77.813 kb on + strand, within HMPREF1058_RS05800 at 78.026 kb on - strand, within HMPREF1058_RS05795 at 78.094 kb on + strand, within HMPREF1058_RS05795 at 78.097 kb on + strand, within HMPREF1058_RS05795 at 78.115 kb on + strand, within HMPREF1058_RS05795 at 78.182 kb on - strand, within HMPREF1058_RS05795 at 78.297 kb on - strand at 78.303 kb on + strand at 78.324 kb on + strand at 78.325 kb on - strand at 78.325 kb on - strand at 78.363 kb on - strand at 78.372 kb on + strand at 78.447 kb on + strand at 78.691 kb on + strand at 78.696 kb on + strand at 78.728 kb on + strand at 78.728 kb on + strand at 78.730 kb on + strand at 78.730 kb on + strand at 78.731 kb on - strand at 78.731 kb on - strand at 78.734 kb on + strand at 78.760 kb on + strand at 78.761 kb on - strand at 78.761 kb on - strand at 78.766 kb on + strand at 78.766 kb on + strand at 79.087 kb on - strand at 79.118 kb on - strand at 79.134 kb on + strand at 79.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 76,955 + -1.2 76,955 + -1.0 76,955 + +0.8 76,955 + -0.9 76,956 - -1.5 76,956 - -0.6 76,956 - +0.3 76,956 - +0.2 76,977 + -1.3 77,046 + +1.4 77,047 - +0.8 77,055 - -1.8 77,144 - -2.0 77,157 - -2.0 77,194 - +1.0 77,210 - -0.7 77,256 + -0.5 77,277 + +0.6 77,278 - -0.1 77,414 - HMPREF1058_RS05800 0.24 -1.1 77,415 + HMPREF1058_RS05800 0.24 -0.1 77,423 - HMPREF1058_RS05800 0.25 -0.3 77,527 + HMPREF1058_RS05800 0.38 +0.1 77,813 + HMPREF1058_RS05800 0.75 -2.2 78,026 - HMPREF1058_RS05795 0.21 +1.8 78,094 + HMPREF1058_RS05795 0.39 +1.3 78,097 + HMPREF1058_RS05795 0.40 -2.8 78,115 + HMPREF1058_RS05795 0.45 +0.4 78,182 - HMPREF1058_RS05795 0.62 -0.1 78,297 - +0.0 78,303 + +1.4 78,324 + +0.1 78,325 - -0.1 78,325 - +0.4 78,363 - -0.2 78,372 + -0.3 78,447 + -0.3 78,691 + -0.4 78,696 + -1.2 78,728 + -0.6 78,728 + +1.0 78,730 + -1.1 78,730 + -0.3 78,731 - -0.9 78,731 - +0.8 78,734 + -0.0 78,760 + -1.9 78,761 - -0.4 78,761 - +0.1 78,766 + +0.3 78,766 + -1.2 79,087 - -0.9 79,118 - +0.8 79,134 + -0.9 79,135 - +0.6
Or see this region's nucleotide sequence