Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04690 and HMPREF1058_RS04685 are separated by 205 nucleotides HMPREF1058_RS04685 and HMPREF1058_RS04680 are separated by 35 nucleotides
HMPREF1058_RS04690: HMPREF1058_RS04690 - cation:proton antiporter, at 331,674 to 333,941
_RS04690
HMPREF1058_RS04685: HMPREF1058_RS04685 - glycine cleavage system aminomethyltransferase GcvT, at 334,147 to 335,232
_RS04685
HMPREF1058_RS04680: HMPREF1058_RS04680 - peptidase T, at 335,268 to 336,488
_RS04680
Position (kb) 334
335
336 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 333.153 kb on - strand, within HMPREF1058_RS04690 at 333.182 kb on + strand, within HMPREF1058_RS04690 at 333.194 kb on + strand, within HMPREF1058_RS04690 at 333.240 kb on + strand, within HMPREF1058_RS04690 at 333.241 kb on - strand, within HMPREF1058_RS04690 at 333.331 kb on + strand, within HMPREF1058_RS04690 at 333.335 kb on + strand, within HMPREF1058_RS04690 at 333.336 kb on - strand, within HMPREF1058_RS04690 at 333.336 kb on - strand, within HMPREF1058_RS04690 at 333.354 kb on + strand, within HMPREF1058_RS04690 at 333.355 kb on - strand, within HMPREF1058_RS04690 at 333.355 kb on - strand, within HMPREF1058_RS04690 at 333.383 kb on + strand, within HMPREF1058_RS04690 at 333.383 kb on + strand, within HMPREF1058_RS04690 at 333.383 kb on + strand, within HMPREF1058_RS04690 at 333.384 kb on - strand, within HMPREF1058_RS04690 at 333.384 kb on - strand, within HMPREF1058_RS04690 at 333.386 kb on - strand, within HMPREF1058_RS04690 at 333.388 kb on - strand, within HMPREF1058_RS04690 at 333.437 kb on + strand, within HMPREF1058_RS04690 at 333.437 kb on + strand, within HMPREF1058_RS04690 at 333.438 kb on - strand, within HMPREF1058_RS04690 at 333.459 kb on + strand, within HMPREF1058_RS04690 at 333.459 kb on + strand, within HMPREF1058_RS04690 at 333.460 kb on - strand, within HMPREF1058_RS04690 at 333.538 kb on + strand, within HMPREF1058_RS04690 at 333.542 kb on + strand, within HMPREF1058_RS04690 at 333.569 kb on + strand, within HMPREF1058_RS04690 at 333.636 kb on + strand, within HMPREF1058_RS04690 at 333.649 kb on - strand, within HMPREF1058_RS04690 at 333.649 kb on - strand, within HMPREF1058_RS04690 at 333.656 kb on + strand, within HMPREF1058_RS04690 at 333.761 kb on + strand at 333.761 kb on + strand at 333.761 kb on + strand at 333.761 kb on + strand at 333.762 kb on - strand at 333.918 kb on + strand at 333.941 kb on + strand at 333.941 kb on + strand at 333.945 kb on + strand at 333.988 kb on + strand at 334.001 kb on - strand at 334.001 kb on - strand at 334.055 kb on + strand at 334.055 kb on + strand at 334.056 kb on - strand at 334.056 kb on - strand at 334.068 kb on + strand at 334.068 kb on + strand at 334.101 kb on - strand at 334.168 kb on + strand at 334.172 kb on - strand at 334.211 kb on - strand at 334.223 kb on - strand at 334.297 kb on + strand, within HMPREF1058_RS04685 at 334.306 kb on + strand, within HMPREF1058_RS04685 at 334.328 kb on - strand, within HMPREF1058_RS04685 at 334.494 kb on + strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.548 kb on + strand, within HMPREF1058_RS04685 at 334.570 kb on - strand, within HMPREF1058_RS04685 at 334.644 kb on - strand, within HMPREF1058_RS04685 at 334.730 kb on + strand, within HMPREF1058_RS04685 at 334.731 kb on - strand, within HMPREF1058_RS04685 at 334.914 kb on - strand at 334.934 kb on + strand, within HMPREF1058_RS04685 at 334.935 kb on - strand, within HMPREF1058_RS04685 at 334.935 kb on - strand, within HMPREF1058_RS04685 at 334.936 kb on + strand, within HMPREF1058_RS04685 at 334.936 kb on + strand, within HMPREF1058_RS04685 at 334.983 kb on + strand, within HMPREF1058_RS04685 at 334.984 kb on - strand, within HMPREF1058_RS04685 at 334.985 kb on + strand, within HMPREF1058_RS04685 at 335.104 kb on + strand, within HMPREF1058_RS04685 at 335.117 kb on - strand, within HMPREF1058_RS04685 at 335.117 kb on - strand, within HMPREF1058_RS04685 at 335.148 kb on - strand at 335.154 kb on + strand at 335.161 kb on - strand at 335.163 kb on + strand at 335.164 kb on - strand at 335.164 kb on - strand at 335.238 kb on + strand at 335.239 kb on - strand at 335.252 kb on - strand at 335.265 kb on + strand at 335.270 kb on - strand at 335.379 kb on - strand at 335.447 kb on + strand, within HMPREF1058_RS04680 at 335.448 kb on - strand, within HMPREF1058_RS04680 at 335.448 kb on - strand, within HMPREF1058_RS04680 at 335.531 kb on - strand, within HMPREF1058_RS04680 at 335.534 kb on - strand, within HMPREF1058_RS04680 at 335.579 kb on + strand, within HMPREF1058_RS04680 at 335.606 kb on + strand, within HMPREF1058_RS04680 at 335.652 kb on + strand, within HMPREF1058_RS04680 at 335.653 kb on - strand, within HMPREF1058_RS04680 at 335.654 kb on + strand, within HMPREF1058_RS04680 at 335.654 kb on + strand, within HMPREF1058_RS04680 at 335.654 kb on + strand, within HMPREF1058_RS04680 at 335.655 kb on - strand, within HMPREF1058_RS04680 at 335.656 kb on + strand, within HMPREF1058_RS04680 at 335.657 kb on - strand, within HMPREF1058_RS04680 at 335.667 kb on - strand, within HMPREF1058_RS04680 at 335.676 kb on + strand, within HMPREF1058_RS04680 at 335.676 kb on + strand, within HMPREF1058_RS04680 at 335.726 kb on + strand, within HMPREF1058_RS04680 at 335.727 kb on - strand, within HMPREF1058_RS04680 at 335.820 kb on + strand, within HMPREF1058_RS04680 at 335.886 kb on + strand, within HMPREF1058_RS04680 at 335.907 kb on - strand, within HMPREF1058_RS04680 at 335.907 kb on - strand, within HMPREF1058_RS04680 at 335.907 kb on - strand, within HMPREF1058_RS04680 at 336.100 kb on - strand, within HMPREF1058_RS04680 at 336.105 kb on - strand, within HMPREF1058_RS04680 at 336.157 kb on - strand, within HMPREF1058_RS04680 at 336.159 kb on - strand, within HMPREF1058_RS04680 at 336.159 kb on - strand, within HMPREF1058_RS04680 at 336.159 kb on - strand, within HMPREF1058_RS04680 at 336.177 kb on + strand, within HMPREF1058_RS04680 at 336.180 kb on + strand, within HMPREF1058_RS04680 at 336.181 kb on - strand, within HMPREF1058_RS04680
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 333,153 - HMPREF1058_RS04690 0.65 +0.5 333,182 + HMPREF1058_RS04690 0.66 +0.1 333,194 + HMPREF1058_RS04690 0.67 +0.6 333,240 + HMPREF1058_RS04690 0.69 -1.2 333,241 - HMPREF1058_RS04690 0.69 +0.1 333,331 + HMPREF1058_RS04690 0.73 +3.2 333,335 + HMPREF1058_RS04690 0.73 +2.4 333,336 - HMPREF1058_RS04690 0.73 +3.5 333,336 - HMPREF1058_RS04690 0.73 +1.9 333,354 + HMPREF1058_RS04690 0.74 -2.5 333,355 - HMPREF1058_RS04690 0.74 +0.9 333,355 - HMPREF1058_RS04690 0.74 +0.4 333,383 + HMPREF1058_RS04690 0.75 +0.4 333,383 + HMPREF1058_RS04690 0.75 +1.0 333,383 + HMPREF1058_RS04690 0.75 -1.9 333,384 - HMPREF1058_RS04690 0.75 -2.2 333,384 - HMPREF1058_RS04690 0.75 +1.6 333,386 - HMPREF1058_RS04690 0.75 +1.0 333,388 - HMPREF1058_RS04690 0.76 +0.3 333,437 + HMPREF1058_RS04690 0.78 +0.6 333,437 + HMPREF1058_RS04690 0.78 -1.3 333,438 - HMPREF1058_RS04690 0.78 +1.2 333,459 + HMPREF1058_RS04690 0.79 -0.7 333,459 + HMPREF1058_RS04690 0.79 +0.9 333,460 - HMPREF1058_RS04690 0.79 +0.1 333,538 + HMPREF1058_RS04690 0.82 +1.3 333,542 + HMPREF1058_RS04690 0.82 +2.7 333,569 + HMPREF1058_RS04690 0.84 -0.8 333,636 + HMPREF1058_RS04690 0.87 -0.4 333,649 - HMPREF1058_RS04690 0.87 +3.0 333,649 - HMPREF1058_RS04690 0.87 +0.1 333,656 + HMPREF1058_RS04690 0.87 +0.9 333,761 + +1.1 333,761 + -0.4 333,761 + -0.1 333,761 + +0.4 333,762 - -1.0 333,918 + +1.4 333,941 + +2.8 333,941 + +1.4 333,945 + +0.4 333,988 + -0.1 334,001 - +0.8 334,001 - +0.1 334,055 + -0.6 334,055 + +0.1 334,056 - -1.2 334,056 - +0.4 334,068 + -3.4 334,068 + -1.8 334,101 - -0.8 334,168 + +0.8 334,172 - -3.7 334,211 - -0.2 334,223 - -1.0 334,297 + HMPREF1058_RS04685 0.14 +0.8 334,306 + HMPREF1058_RS04685 0.15 -2.3 334,328 - HMPREF1058_RS04685 0.17 -1.2 334,494 + HMPREF1058_RS04685 0.32 -3.2 334,495 - HMPREF1058_RS04685 0.32 -2.3 334,495 - HMPREF1058_RS04685 0.32 -0.2 334,495 - HMPREF1058_RS04685 0.32 -0.8 334,548 + HMPREF1058_RS04685 0.37 -0.3 334,570 - HMPREF1058_RS04685 0.39 -4.0 334,644 - HMPREF1058_RS04685 0.46 -2.3 334,730 + HMPREF1058_RS04685 0.54 -0.4 334,731 - HMPREF1058_RS04685 0.54 -2.1 334,914 - +0.8 334,934 + HMPREF1058_RS04685 0.72 +0.4 334,935 - HMPREF1058_RS04685 0.73 -0.6 334,935 - HMPREF1058_RS04685 0.73 -1.4 334,936 + HMPREF1058_RS04685 0.73 -0.8 334,936 + HMPREF1058_RS04685 0.73 -2.5 334,983 + HMPREF1058_RS04685 0.77 -2.1 334,984 - HMPREF1058_RS04685 0.77 -2.3 334,985 + HMPREF1058_RS04685 0.77 -0.6 335,104 + HMPREF1058_RS04685 0.88 -2.2 335,117 - HMPREF1058_RS04685 0.89 -2.1 335,117 - HMPREF1058_RS04685 0.89 -3.2 335,148 - -2.2 335,154 + -0.7 335,161 - -1.1 335,163 + +1.4 335,164 - +0.2 335,164 - -1.1 335,238 + -1.9 335,239 - -5.2 335,252 - +1.3 335,265 + -4.0 335,270 - +0.0 335,379 - -0.1 335,447 + HMPREF1058_RS04680 0.15 -1.0 335,448 - HMPREF1058_RS04680 0.15 -0.8 335,448 - HMPREF1058_RS04680 0.15 -0.6 335,531 - HMPREF1058_RS04680 0.22 +0.4 335,534 - HMPREF1058_RS04680 0.22 -0.8 335,579 + HMPREF1058_RS04680 0.25 -0.2 335,606 + HMPREF1058_RS04680 0.28 -1.3 335,652 + HMPREF1058_RS04680 0.31 -1.4 335,653 - HMPREF1058_RS04680 0.32 -0.4 335,654 + HMPREF1058_RS04680 0.32 -1.3 335,654 + HMPREF1058_RS04680 0.32 -3.9 335,654 + HMPREF1058_RS04680 0.32 -0.3 335,655 - HMPREF1058_RS04680 0.32 -0.2 335,656 + HMPREF1058_RS04680 0.32 +0.4 335,657 - HMPREF1058_RS04680 0.32 -0.4 335,667 - HMPREF1058_RS04680 0.33 -0.2 335,676 + HMPREF1058_RS04680 0.33 -1.1 335,676 + HMPREF1058_RS04680 0.33 -0.4 335,726 + HMPREF1058_RS04680 0.38 +0.2 335,727 - HMPREF1058_RS04680 0.38 +0.1 335,820 + HMPREF1058_RS04680 0.45 -0.6 335,886 + HMPREF1058_RS04680 0.51 -0.7 335,907 - HMPREF1058_RS04680 0.52 +0.8 335,907 - HMPREF1058_RS04680 0.52 -1.3 335,907 - HMPREF1058_RS04680 0.52 -1.8 336,100 - HMPREF1058_RS04680 0.68 +1.2 336,105 - HMPREF1058_RS04680 0.69 +0.9 336,157 - HMPREF1058_RS04680 0.73 +0.9 336,159 - HMPREF1058_RS04680 0.73 -0.8 336,159 - HMPREF1058_RS04680 0.73 -0.8 336,159 - HMPREF1058_RS04680 0.73 -0.4 336,177 + HMPREF1058_RS04680 0.74 -1.7 336,180 + HMPREF1058_RS04680 0.75 -0.2 336,181 - HMPREF1058_RS04680 0.75 -1.1
Or see this region's nucleotide sequence