Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19125 and HMPREF1058_RS19120 are separated by 11 nucleotides HMPREF1058_RS19120 and HMPREF1058_RS19115 are separated by 122 nucleotides
HMPREF1058_RS19125: HMPREF1058_RS19125 - hypothetical protein, at 20,227 to 21,240
_RS19125
HMPREF1058_RS19120: HMPREF1058_RS19120 - hypothetical protein, at 21,252 to 21,440
_RS19120
HMPREF1058_RS19115: HMPREF1058_RS19115 - hypothetical protein, at 21,563 to 22,699
_RS19115
Position (kb) 21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 20.381 kb on + strand, within HMPREF1058_RS19125 at 20.412 kb on + strand, within HMPREF1058_RS19125 at 20.413 kb on - strand, within HMPREF1058_RS19125 at 20.543 kb on + strand, within HMPREF1058_RS19125 at 20.674 kb on - strand, within HMPREF1058_RS19125 at 20.706 kb on + strand, within HMPREF1058_RS19125 at 20.707 kb on - strand at 20.741 kb on - strand, within HMPREF1058_RS19125 at 20.871 kb on - strand, within HMPREF1058_RS19125 at 20.871 kb on - strand, within HMPREF1058_RS19125 at 21.089 kb on - strand, within HMPREF1058_RS19125 at 21.149 kb on + strand at 21.204 kb on + strand at 21.225 kb on - strand at 21.287 kb on + strand, within HMPREF1058_RS19120 at 21.419 kb on + strand, within HMPREF1058_RS19120 at 21.446 kb on - strand at 21.463 kb on - strand at 21.564 kb on + strand at 21.566 kb on + strand at 21.566 kb on + strand at 21.566 kb on + strand at 21.567 kb on - strand at 21.604 kb on + strand at 21.630 kb on + strand at 21.700 kb on + strand, within HMPREF1058_RS19115 at 21.718 kb on + strand, within HMPREF1058_RS19115 at 21.719 kb on - strand, within HMPREF1058_RS19115 at 21.719 kb on - strand, within HMPREF1058_RS19115 at 21.719 kb on - strand, within HMPREF1058_RS19115 at 21.882 kb on - strand, within HMPREF1058_RS19115 at 21.926 kb on - strand, within HMPREF1058_RS19115 at 21.984 kb on + strand, within HMPREF1058_RS19115 at 22.002 kb on - strand, within HMPREF1058_RS19115 at 22.003 kb on + strand, within HMPREF1058_RS19115 at 22.003 kb on + strand, within HMPREF1058_RS19115 at 22.004 kb on - strand, within HMPREF1058_RS19115 at 22.004 kb on - strand, within HMPREF1058_RS19115 at 22.071 kb on - strand, within HMPREF1058_RS19115 at 22.071 kb on - strand, within HMPREF1058_RS19115 at 22.073 kb on - strand, within HMPREF1058_RS19115 at 22.128 kb on + strand, within HMPREF1058_RS19115 at 22.129 kb on - strand, within HMPREF1058_RS19115 at 22.129 kb on - strand, within HMPREF1058_RS19115 at 22.146 kb on + strand, within HMPREF1058_RS19115 at 22.253 kb on + strand, within HMPREF1058_RS19115 at 22.253 kb on + strand, within HMPREF1058_RS19115 at 22.309 kb on - strand, within HMPREF1058_RS19115 at 22.338 kb on - strand, within HMPREF1058_RS19115 at 22.338 kb on - strand, within HMPREF1058_RS19115 at 22.380 kb on - strand, within HMPREF1058_RS19115 at 22.413 kb on + strand, within HMPREF1058_RS19115 at 22.414 kb on - strand, within HMPREF1058_RS19115
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 remove 20,381 + HMPREF1058_RS19125 0.15 +0.1 20,412 + HMPREF1058_RS19125 0.18 -0.5 20,413 - HMPREF1058_RS19125 0.18 -1.1 20,543 + HMPREF1058_RS19125 0.31 +0.1 20,674 - HMPREF1058_RS19125 0.44 -0.5 20,706 + HMPREF1058_RS19125 0.47 -0.3 20,707 - +1.1 20,741 - HMPREF1058_RS19125 0.51 -2.3 20,871 - HMPREF1058_RS19125 0.64 -1.5 20,871 - HMPREF1058_RS19125 0.64 +0.0 21,089 - HMPREF1058_RS19125 0.85 -0.5 21,149 + -0.1 21,204 + -1.1 21,225 - -1.3 21,287 + HMPREF1058_RS19120 0.19 +1.3 21,419 + HMPREF1058_RS19120 0.88 -0.5 21,446 - -1.1 21,463 - -1.2 21,564 + -0.3 21,566 + -0.8 21,566 + +0.5 21,566 + -2.8 21,567 - -2.9 21,604 + +0.5 21,630 + -0.3 21,700 + HMPREF1058_RS19115 0.12 -0.5 21,718 + HMPREF1058_RS19115 0.14 -0.5 21,719 - HMPREF1058_RS19115 0.14 -2.1 21,719 - HMPREF1058_RS19115 0.14 -1.7 21,719 - HMPREF1058_RS19115 0.14 -3.2 21,882 - HMPREF1058_RS19115 0.28 -1.6 21,926 - HMPREF1058_RS19115 0.32 +0.2 21,984 + HMPREF1058_RS19115 0.37 -1.5 22,002 - HMPREF1058_RS19115 0.39 +0.0 22,003 + HMPREF1058_RS19115 0.39 -0.9 22,003 + HMPREF1058_RS19115 0.39 -0.3 22,004 - HMPREF1058_RS19115 0.39 -0.6 22,004 - HMPREF1058_RS19115 0.39 -0.7 22,071 - HMPREF1058_RS19115 0.45 +1.2 22,071 - HMPREF1058_RS19115 0.45 +1.1 22,073 - HMPREF1058_RS19115 0.45 +0.3 22,128 + HMPREF1058_RS19115 0.50 +0.6 22,129 - HMPREF1058_RS19115 0.50 -2.1 22,129 - HMPREF1058_RS19115 0.50 -2.3 22,146 + HMPREF1058_RS19115 0.51 -1.1 22,253 + HMPREF1058_RS19115 0.61 -1.2 22,253 + HMPREF1058_RS19115 0.61 -1.3 22,309 - HMPREF1058_RS19115 0.66 +1.7 22,338 - HMPREF1058_RS19115 0.68 +1.1 22,338 - HMPREF1058_RS19115 0.68 -1.1 22,380 - HMPREF1058_RS19115 0.72 +2.1 22,413 + HMPREF1058_RS19115 0.75 -0.8 22,414 - HMPREF1058_RS19115 0.75 +0.0
Or see this region's nucleotide sequence