Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03880 and HMPREF1058_RS03875 are separated by 78 nucleotides HMPREF1058_RS03875 and HMPREF1058_RS03870 are separated by 445 nucleotides HMPREF1058_RS03870 and HMPREF1058_RS03865 overlap by 4 nucleotides
HMPREF1058_RS03880: HMPREF1058_RS03880 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 166,427 to 167,185
_RS03880
HMPREF1058_RS03875: HMPREF1058_RS03875 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 167,264 to 167,638
_RS03875
HMPREF1058_RS03870: HMPREF1058_RS03870 - TetR/AcrR family transcriptional regulator, at 168,084 to 168,701
_RS03870
HMPREF1058_RS03865: HMPREF1058_RS03865 - TolC family protein, at 168,698 to 169,996
_RS03865
Position (kb) 168
169 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 167.201 kb on - strand at 167.256 kb on + strand at 167.299 kb on + strand at 167.606 kb on + strand at 167.607 kb on - strand at 167.645 kb on + strand at 167.653 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.656 kb on - strand at 167.656 kb on - strand at 167.657 kb on + strand at 167.757 kb on - strand at 167.779 kb on - strand at 167.867 kb on + strand at 167.982 kb on + strand at 168.257 kb on - strand, within HMPREF1058_RS03870 at 168.385 kb on + strand, within HMPREF1058_RS03870 at 168.398 kb on - strand, within HMPREF1058_RS03870 at 168.400 kb on - strand, within HMPREF1058_RS03870 at 168.572 kb on + strand, within HMPREF1058_RS03870 at 168.608 kb on - strand, within HMPREF1058_RS03870 at 168.608 kb on - strand, within HMPREF1058_RS03870 at 168.642 kb on + strand at 168.643 kb on - strand at 168.644 kb on + strand at 168.644 kb on + strand at 169.103 kb on + strand, within HMPREF1058_RS03865 at 169.103 kb on + strand, within HMPREF1058_RS03865 at 169.104 kb on - strand, within HMPREF1058_RS03865 at 169.195 kb on - strand, within HMPREF1058_RS03865 at 169.290 kb on + strand, within HMPREF1058_RS03865 at 169.290 kb on + strand, within HMPREF1058_RS03865 at 169.401 kb on + strand, within HMPREF1058_RS03865 at 169.402 kb on - strand, within HMPREF1058_RS03865 at 169.411 kb on - strand, within HMPREF1058_RS03865 at 169.413 kb on + strand, within HMPREF1058_RS03865 at 169.413 kb on + strand, within HMPREF1058_RS03865 at 169.413 kb on + strand, within HMPREF1058_RS03865 at 169.414 kb on - strand, within HMPREF1058_RS03865 at 169.417 kb on + strand, within HMPREF1058_RS03865 at 169.505 kb on - strand, within HMPREF1058_RS03865 at 169.543 kb on - strand, within HMPREF1058_RS03865 at 169.607 kb on + strand, within HMPREF1058_RS03865 at 169.607 kb on + strand, within HMPREF1058_RS03865 at 169.647 kb on + strand, within HMPREF1058_RS03865 at 169.648 kb on - strand, within HMPREF1058_RS03865 at 169.648 kb on - strand, within HMPREF1058_RS03865 at 169.648 kb on - strand, within HMPREF1058_RS03865 at 169.649 kb on + strand, within HMPREF1058_RS03865 at 169.649 kb on + strand, within HMPREF1058_RS03865 at 169.650 kb on - strand, within HMPREF1058_RS03865 at 169.651 kb on + strand, within HMPREF1058_RS03865 at 169.651 kb on + strand, within HMPREF1058_RS03865
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 remove 167,201 - -0.7 167,256 + +2.6 167,299 + -0.3 167,606 + +0.3 167,607 - +1.0 167,645 + +0.9 167,653 + +0.5 167,655 + -0.3 167,655 + +1.8 167,656 - -0.7 167,656 - +0.1 167,657 + -1.0 167,757 - -2.3 167,779 - +1.5 167,867 + +0.2 167,982 + +1.2 168,257 - HMPREF1058_RS03870 0.28 -0.0 168,385 + HMPREF1058_RS03870 0.49 +0.5 168,398 - HMPREF1058_RS03870 0.51 -0.4 168,400 - HMPREF1058_RS03870 0.51 -0.9 168,572 + HMPREF1058_RS03870 0.79 +1.1 168,608 - HMPREF1058_RS03870 0.85 -2.2 168,608 - HMPREF1058_RS03870 0.85 -0.7 168,642 + +0.0 168,643 - +0.1 168,644 + +1.0 168,644 + -1.6 169,103 + HMPREF1058_RS03865 0.31 +1.2 169,103 + HMPREF1058_RS03865 0.31 -3.5 169,104 - HMPREF1058_RS03865 0.31 -0.1 169,195 - HMPREF1058_RS03865 0.38 -4.0 169,290 + HMPREF1058_RS03865 0.46 +0.2 169,290 + HMPREF1058_RS03865 0.46 +1.7 169,401 + HMPREF1058_RS03865 0.54 -0.4 169,402 - HMPREF1058_RS03865 0.54 +0.0 169,411 - HMPREF1058_RS03865 0.55 +0.6 169,413 + HMPREF1058_RS03865 0.55 -0.2 169,413 + HMPREF1058_RS03865 0.55 +1.7 169,413 + HMPREF1058_RS03865 0.55 -1.2 169,414 - HMPREF1058_RS03865 0.55 -0.7 169,417 + HMPREF1058_RS03865 0.55 +0.7 169,505 - HMPREF1058_RS03865 0.62 +0.8 169,543 - HMPREF1058_RS03865 0.65 -0.2 169,607 + HMPREF1058_RS03865 0.70 -1.7 169,607 + HMPREF1058_RS03865 0.70 +0.2 169,647 + HMPREF1058_RS03865 0.73 +0.1 169,648 - HMPREF1058_RS03865 0.73 +0.3 169,648 - HMPREF1058_RS03865 0.73 -1.4 169,648 - HMPREF1058_RS03865 0.73 +1.0 169,649 + HMPREF1058_RS03865 0.73 -0.3 169,649 + HMPREF1058_RS03865 0.73 -0.0 169,650 - HMPREF1058_RS03865 0.73 -0.5 169,651 + HMPREF1058_RS03865 0.73 -0.3 169,651 + HMPREF1058_RS03865 0.73 -0.7
Or see this region's nucleotide sequence