Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06925 and HMPREF1058_RS06920 are separated by 24 nucleotides
HMPREF1058_RS06925: HMPREF1058_RS06925 - glutamate synthase subunit beta, at 354,510 to 355,850
_RS06925
HMPREF1058_RS06920: HMPREF1058_RS06920 - glutamate synthase large subunit, at 355,875 to 360,353
_RS06920
Position (kb) 355
356
357
358
359
360
361 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 354.966 kb on + strand, within HMPREF1058_RS06925 at 355.306 kb on - strand, within HMPREF1058_RS06925 at 355.606 kb on - strand, within HMPREF1058_RS06925 at 355.606 kb on - strand, within HMPREF1058_RS06925 at 355.769 kb on + strand at 355.823 kb on + strand at 355.879 kb on + strand at 355.899 kb on + strand at 355.946 kb on + strand at 355.947 kb on - strand at 355.960 kb on - strand at 356.038 kb on + strand at 356.233 kb on + strand at 356.254 kb on - strand at 356.262 kb on + strand at 356.323 kb on + strand, within HMPREF1058_RS06920 at 356.348 kb on - strand, within HMPREF1058_RS06920 at 356.742 kb on + strand, within HMPREF1058_RS06920 at 356.769 kb on + strand, within HMPREF1058_RS06920 at 356.770 kb on - strand, within HMPREF1058_RS06920 at 356.823 kb on + strand, within HMPREF1058_RS06920 at 356.823 kb on + strand at 356.824 kb on - strand, within HMPREF1058_RS06920 at 356.921 kb on - strand, within HMPREF1058_RS06920 at 356.932 kb on + strand, within HMPREF1058_RS06920 at 356.933 kb on - strand, within HMPREF1058_RS06920 at 357.604 kb on - strand, within HMPREF1058_RS06920 at 357.604 kb on - strand, within HMPREF1058_RS06920 at 357.604 kb on - strand, within HMPREF1058_RS06920 at 357.641 kb on - strand, within HMPREF1058_RS06920 at 358.249 kb on + strand, within HMPREF1058_RS06920 at 358.271 kb on - strand, within HMPREF1058_RS06920 at 358.524 kb on - strand, within HMPREF1058_RS06920 at 358.526 kb on - strand, within HMPREF1058_RS06920 at 358.526 kb on - strand, within HMPREF1058_RS06920 at 358.650 kb on - strand, within HMPREF1058_RS06920 at 358.711 kb on - strand, within HMPREF1058_RS06920 at 358.850 kb on - strand, within HMPREF1058_RS06920 at 358.959 kb on + strand, within HMPREF1058_RS06920 at 359.235 kb on + strand, within HMPREF1058_RS06920 at 359.375 kb on - strand, within HMPREF1058_RS06920 at 359.676 kb on - strand, within HMPREF1058_RS06920 at 359.706 kb on + strand, within HMPREF1058_RS06920 at 359.707 kb on - strand, within HMPREF1058_RS06920 at 359.707 kb on - strand, within HMPREF1058_RS06920 at 359.707 kb on - strand, within HMPREF1058_RS06920 at 359.732 kb on - strand, within HMPREF1058_RS06920 at 359.789 kb on + strand, within HMPREF1058_RS06920 at 359.791 kb on + strand, within HMPREF1058_RS06920 at 359.793 kb on + strand, within HMPREF1058_RS06920 at 359.853 kb on + strand, within HMPREF1058_RS06920 at 359.872 kb on + strand, within HMPREF1058_RS06920 at 359.920 kb on - strand at 360.228 kb on + strand at 360.246 kb on + strand at 360.247 kb on - strand at 360.595 kb on + strand at 360.598 kb on - strand at 360.598 kb on - strand at 360.603 kb on + strand at 360.603 kb on + strand at 360.685 kb on + strand at 360.685 kb on + strand at 360.686 kb on - strand at 360.706 kb on - strand at 360.762 kb on + strand at 360.796 kb on + strand at 360.797 kb on - strand at 360.797 kb on - strand at 360.815 kb on - strand at 360.816 kb on + strand at 360.817 kb on - strand at 360.818 kb on + strand at 360.818 kb on + strand at 360.819 kb on - strand at 360.837 kb on - strand at 360.837 kb on - strand at 360.838 kb on + strand at 360.839 kb on - strand at 360.841 kb on - strand at 361.128 kb on + strand at 361.263 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 remove 354,966 + HMPREF1058_RS06925 0.34 -2.4 355,306 - HMPREF1058_RS06925 0.59 +0.6 355,606 - HMPREF1058_RS06925 0.82 -1.1 355,606 - HMPREF1058_RS06925 0.82 -0.3 355,769 + +0.2 355,823 + -1.6 355,879 + -0.9 355,899 + +1.0 355,946 + -1.8 355,947 - -0.4 355,960 - +0.0 356,038 + -0.9 356,233 + +1.0 356,254 - -1.0 356,262 + -2.6 356,323 + HMPREF1058_RS06920 0.10 -0.8 356,348 - HMPREF1058_RS06920 0.11 +0.0 356,742 + HMPREF1058_RS06920 0.19 -0.1 356,769 + HMPREF1058_RS06920 0.20 -2.1 356,770 - HMPREF1058_RS06920 0.20 -0.2 356,823 + HMPREF1058_RS06920 0.21 -2.6 356,823 + +3.0 356,824 - HMPREF1058_RS06920 0.21 -1.4 356,921 - HMPREF1058_RS06920 0.23 -3.8 356,932 + HMPREF1058_RS06920 0.24 -1.4 356,933 - HMPREF1058_RS06920 0.24 +0.2 357,604 - HMPREF1058_RS06920 0.39 -1.5 357,604 - HMPREF1058_RS06920 0.39 -0.7 357,604 - HMPREF1058_RS06920 0.39 -1.2 357,641 - HMPREF1058_RS06920 0.39 -1.1 358,249 + HMPREF1058_RS06920 0.53 -0.7 358,271 - HMPREF1058_RS06920 0.53 +0.7 358,524 - HMPREF1058_RS06920 0.59 -2.1 358,526 - HMPREF1058_RS06920 0.59 -2.0 358,526 - HMPREF1058_RS06920 0.59 -0.5 358,650 - HMPREF1058_RS06920 0.62 -2.3 358,711 - HMPREF1058_RS06920 0.63 +0.4 358,850 - HMPREF1058_RS06920 0.66 +0.8 358,959 + HMPREF1058_RS06920 0.69 -2.0 359,235 + HMPREF1058_RS06920 0.75 -1.1 359,375 - HMPREF1058_RS06920 0.78 -1.4 359,676 - HMPREF1058_RS06920 0.85 -0.4 359,706 + HMPREF1058_RS06920 0.86 +0.7 359,707 - HMPREF1058_RS06920 0.86 +0.4 359,707 - HMPREF1058_RS06920 0.86 +0.0 359,707 - HMPREF1058_RS06920 0.86 -1.5 359,732 - HMPREF1058_RS06920 0.86 +1.4 359,789 + HMPREF1058_RS06920 0.87 -0.4 359,791 + HMPREF1058_RS06920 0.87 -1.2 359,793 + HMPREF1058_RS06920 0.87 -1.0 359,853 + HMPREF1058_RS06920 0.89 -0.7 359,872 + HMPREF1058_RS06920 0.89 -1.6 359,920 - +1.0 360,228 + -0.8 360,246 + -0.1 360,247 - -2.6 360,595 + -3.0 360,598 - -1.4 360,598 - +0.2 360,603 + +0.3 360,603 + +1.0 360,685 + -2.4 360,685 + +0.7 360,686 - +0.0 360,706 - -0.3 360,762 + -0.2 360,796 + +0.5 360,797 - -1.3 360,797 - -0.4 360,815 - -0.3 360,816 + -0.4 360,817 - -0.1 360,818 + +0.7 360,818 + -0.1 360,819 - +1.4 360,837 - +2.0 360,837 - +1.4 360,838 + -1.0 360,839 - -0.1 360,841 - -0.8 361,128 + -0.9 361,263 + -1.6
Or see this region's nucleotide sequence