Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04495 and HMPREF1058_RS04490 are separated by 86 nucleotides HMPREF1058_RS04490 and HMPREF1058_RS04485 are separated by 85 nucleotides
HMPREF1058_RS04495: HMPREF1058_RS04495 - serpin family protein, at 16,887 to 18,128
_RS04495
HMPREF1058_RS04490: HMPREF1058_RS04490 - energy transducer TonB, at 18,215 to 19,645
_RS04490
HMPREF1058_RS04485: HMPREF1058_RS04485 - hypothetical protein, at 19,731 to 20,804
_RS04485
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 17.238 kb on - strand, within HMPREF1058_RS04495 at 17.244 kb on + strand, within HMPREF1058_RS04495 at 17.244 kb on + strand, within HMPREF1058_RS04495 at 17.244 kb on + strand, within HMPREF1058_RS04495 at 17.244 kb on + strand, within HMPREF1058_RS04495 at 17.245 kb on - strand, within HMPREF1058_RS04495 at 17.247 kb on - strand, within HMPREF1058_RS04495 at 17.247 kb on - strand, within HMPREF1058_RS04495 at 17.249 kb on + strand, within HMPREF1058_RS04495 at 17.317 kb on - strand, within HMPREF1058_RS04495 at 17.535 kb on - strand, within HMPREF1058_RS04495 at 17.552 kb on + strand, within HMPREF1058_RS04495 at 17.582 kb on + strand, within HMPREF1058_RS04495 at 17.583 kb on - strand, within HMPREF1058_RS04495 at 17.583 kb on - strand, within HMPREF1058_RS04495 at 17.617 kb on - strand, within HMPREF1058_RS04495 at 17.618 kb on + strand, within HMPREF1058_RS04495 at 17.618 kb on + strand, within HMPREF1058_RS04495 at 17.619 kb on - strand, within HMPREF1058_RS04495 at 17.707 kb on - strand, within HMPREF1058_RS04495 at 17.708 kb on + strand, within HMPREF1058_RS04495 at 17.753 kb on + strand, within HMPREF1058_RS04495 at 17.753 kb on + strand, within HMPREF1058_RS04495 at 17.805 kb on - strand, within HMPREF1058_RS04495 at 18.002 kb on + strand, within HMPREF1058_RS04495 at 18.002 kb on + strand, within HMPREF1058_RS04495 at 18.003 kb on - strand, within HMPREF1058_RS04495 at 18.087 kb on - strand at 18.115 kb on - strand at 18.183 kb on + strand at 18.433 kb on + strand, within HMPREF1058_RS04490 at 18.433 kb on + strand, within HMPREF1058_RS04490 at 18.474 kb on - strand, within HMPREF1058_RS04490 at 18.474 kb on - strand, within HMPREF1058_RS04490 at 18.529 kb on + strand, within HMPREF1058_RS04490 at 18.532 kb on - strand, within HMPREF1058_RS04490 at 18.642 kb on + strand, within HMPREF1058_RS04490 at 18.660 kb on + strand, within HMPREF1058_RS04490 at 18.661 kb on - strand, within HMPREF1058_RS04490 at 18.661 kb on - strand, within HMPREF1058_RS04490 at 18.662 kb on + strand, within HMPREF1058_RS04490 at 18.662 kb on + strand, within HMPREF1058_RS04490 at 18.662 kb on + strand, within HMPREF1058_RS04490 at 18.694 kb on - strand, within HMPREF1058_RS04490 at 18.872 kb on - strand, within HMPREF1058_RS04490 at 18.889 kb on - strand, within HMPREF1058_RS04490 at 18.909 kb on + strand, within HMPREF1058_RS04490 at 18.916 kb on + strand, within HMPREF1058_RS04490 at 19.029 kb on - strand, within HMPREF1058_RS04490 at 19.096 kb on + strand, within HMPREF1058_RS04490 at 19.298 kb on + strand, within HMPREF1058_RS04490 at 19.304 kb on - strand, within HMPREF1058_RS04490 at 19.310 kb on + strand, within HMPREF1058_RS04490 at 19.311 kb on - strand, within HMPREF1058_RS04490 at 19.371 kb on + strand, within HMPREF1058_RS04490 at 19.372 kb on - strand, within HMPREF1058_RS04490 at 19.373 kb on + strand, within HMPREF1058_RS04490 at 19.373 kb on + strand, within HMPREF1058_RS04490 at 19.374 kb on - strand, within HMPREF1058_RS04490 at 19.409 kb on - strand, within HMPREF1058_RS04490 at 19.417 kb on + strand, within HMPREF1058_RS04490 at 19.497 kb on - strand, within HMPREF1058_RS04490 at 19.501 kb on - strand, within HMPREF1058_RS04490 at 19.502 kb on + strand, within HMPREF1058_RS04490 at 19.508 kb on + strand at 19.629 kb on - strand at 19.645 kb on + strand at 19.674 kb on + strand at 19.728 kb on + strand at 19.729 kb on - strand at 19.736 kb on + strand at 19.737 kb on - strand at 19.850 kb on - strand, within HMPREF1058_RS04485 at 19.861 kb on + strand, within HMPREF1058_RS04485 at 19.940 kb on - strand, within HMPREF1058_RS04485 at 19.940 kb on - strand, within HMPREF1058_RS04485 at 20.056 kb on - strand, within HMPREF1058_RS04485 at 20.138 kb on - strand, within HMPREF1058_RS04485 at 20.272 kb on - strand, within HMPREF1058_RS04485 at 20.406 kb on + strand, within HMPREF1058_RS04485 at 20.466 kb on - strand, within HMPREF1058_RS04485 at 20.488 kb on - strand, within HMPREF1058_RS04485 at 20.568 kb on + strand, within HMPREF1058_RS04485
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 remove 17,238 - HMPREF1058_RS04495 0.28 -0.1 17,244 + HMPREF1058_RS04495 0.29 +0.3 17,244 + HMPREF1058_RS04495 0.29 -0.8 17,244 + HMPREF1058_RS04495 0.29 -3.6 17,244 + HMPREF1058_RS04495 0.29 -0.6 17,245 - HMPREF1058_RS04495 0.29 +1.3 17,247 - HMPREF1058_RS04495 0.29 -1.1 17,247 - HMPREF1058_RS04495 0.29 +1.9 17,249 + HMPREF1058_RS04495 0.29 -0.5 17,317 - HMPREF1058_RS04495 0.35 +2.9 17,535 - HMPREF1058_RS04495 0.52 +0.3 17,552 + HMPREF1058_RS04495 0.54 -0.1 17,582 + HMPREF1058_RS04495 0.56 +0.3 17,583 - HMPREF1058_RS04495 0.56 -2.0 17,583 - HMPREF1058_RS04495 0.56 -0.7 17,617 - HMPREF1058_RS04495 0.59 +1.1 17,618 + HMPREF1058_RS04495 0.59 +0.0 17,618 + HMPREF1058_RS04495 0.59 +0.3 17,619 - HMPREF1058_RS04495 0.59 -0.3 17,707 - HMPREF1058_RS04495 0.66 +0.9 17,708 + HMPREF1058_RS04495 0.66 -0.3 17,753 + HMPREF1058_RS04495 0.70 -1.1 17,753 + HMPREF1058_RS04495 0.70 +0.5 17,805 - HMPREF1058_RS04495 0.74 -0.3 18,002 + HMPREF1058_RS04495 0.90 +0.3 18,002 + HMPREF1058_RS04495 0.90 +0.1 18,003 - HMPREF1058_RS04495 0.90 +0.5 18,087 - -0.1 18,115 - +0.5 18,183 + -0.0 18,433 + HMPREF1058_RS04490 0.15 -1.0 18,433 + HMPREF1058_RS04490 0.15 -0.1 18,474 - HMPREF1058_RS04490 0.18 -0.5 18,474 - HMPREF1058_RS04490 0.18 +1.3 18,529 + HMPREF1058_RS04490 0.22 +1.3 18,532 - HMPREF1058_RS04490 0.22 +2.9 18,642 + HMPREF1058_RS04490 0.30 -0.8 18,660 + HMPREF1058_RS04490 0.31 -0.5 18,661 - HMPREF1058_RS04490 0.31 +0.3 18,661 - HMPREF1058_RS04490 0.31 -1.4 18,662 + HMPREF1058_RS04490 0.31 +0.4 18,662 + HMPREF1058_RS04490 0.31 +0.5 18,662 + HMPREF1058_RS04490 0.31 +3.3 18,694 - HMPREF1058_RS04490 0.33 +0.3 18,872 - HMPREF1058_RS04490 0.46 +0.7 18,889 - HMPREF1058_RS04490 0.47 -0.1 18,909 + HMPREF1058_RS04490 0.48 -0.1 18,916 + HMPREF1058_RS04490 0.49 -1.4 19,029 - HMPREF1058_RS04490 0.57 -0.1 19,096 + HMPREF1058_RS04490 0.62 +0.3 19,298 + HMPREF1058_RS04490 0.76 +0.3 19,304 - HMPREF1058_RS04490 0.76 +0.1 19,310 + HMPREF1058_RS04490 0.77 +0.3 19,311 - HMPREF1058_RS04490 0.77 +0.9 19,371 + HMPREF1058_RS04490 0.81 +1.9 19,372 - HMPREF1058_RS04490 0.81 +0.0 19,373 + HMPREF1058_RS04490 0.81 +1.5 19,373 + HMPREF1058_RS04490 0.81 +3.6 19,374 - HMPREF1058_RS04490 0.81 -0.7 19,409 - HMPREF1058_RS04490 0.83 -0.3 19,417 + HMPREF1058_RS04490 0.84 +0.4 19,497 - HMPREF1058_RS04490 0.90 +2.9 19,501 - HMPREF1058_RS04490 0.90 +0.5 19,502 + HMPREF1058_RS04490 0.90 +0.5 19,508 + +1.3 19,629 - +0.3 19,645 + -2.1 19,674 + +0.5 19,728 + -1.6 19,729 - +0.6 19,736 + -1.3 19,737 - -0.3 19,850 - HMPREF1058_RS04485 0.11 -1.1 19,861 + HMPREF1058_RS04485 0.12 +0.5 19,940 - HMPREF1058_RS04485 0.19 +0.9 19,940 - HMPREF1058_RS04485 0.19 -1.0 20,056 - HMPREF1058_RS04485 0.30 +1.9 20,138 - HMPREF1058_RS04485 0.38 +2.3 20,272 - HMPREF1058_RS04485 0.50 -0.3 20,406 + HMPREF1058_RS04485 0.63 +1.3 20,466 - HMPREF1058_RS04485 0.68 +0.7 20,488 - HMPREF1058_RS04485 0.70 -1.2 20,568 + HMPREF1058_RS04485 0.78 -0.8
Or see this region's nucleotide sequence