Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21045 and HMPREF1058_RS04435 are separated by 157 nucleotides HMPREF1058_RS04435 and HMPREF1058_RS21050 are separated by 253 nucleotides HMPREF1058_RS21050 and HMPREF1058_RS04430 are separated by 124 nucleotides HMPREF1058_RS04430 and HMPREF1058_RS04425 are separated by 912 nucleotides
HMPREF1058_RS21045: HMPREF1058_RS21045 - hypothetical protein, at 36,125 to 36,364
_RS21045
HMPREF1058_RS04435: HMPREF1058_RS04435 - hypothetical protein, at 36,522 to 36,779
_RS04435
HMPREF1058_RS21050: HMPREF1058_RS21050 - transposase, at 37,033 to 37,196
_RS21050
HMPREF1058_RS04430: HMPREF1058_RS04430 - alpha-1,2-fucosyltransferase, at 37,321 to 38,166
_RS04430
HMPREF1058_RS04425: HMPREF1058_RS04425 - mechanosensitive ion channel, at 39,079 to 39,924
_RS04425
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 36.480 kb on + strand at 36.489 kb on - strand at 36.489 kb on - strand at 36.499 kb on + strand at 36.500 kb on + strand at 36.502 kb on + strand at 36.514 kb on - strand at 36.521 kb on + strand at 36.527 kb on + strand at 36.528 kb on - strand at 36.529 kb on + strand at 36.599 kb on + strand, within HMPREF1058_RS04435 at 36.614 kb on + strand, within HMPREF1058_RS04435 at 36.638 kb on - strand, within HMPREF1058_RS04435 at 36.643 kb on - strand, within HMPREF1058_RS04435 at 36.652 kb on + strand, within HMPREF1058_RS04435 at 36.653 kb on - strand, within HMPREF1058_RS04435 at 36.653 kb on - strand, within HMPREF1058_RS04435 at 36.679 kb on + strand, within HMPREF1058_RS04435 at 36.680 kb on - strand, within HMPREF1058_RS04435 at 36.680 kb on - strand, within HMPREF1058_RS04435 at 36.708 kb on + strand, within HMPREF1058_RS04435 at 36.799 kb on + strand at 36.938 kb on + strand at 36.939 kb on - strand at 37.178 kb on + strand, within HMPREF1058_RS21050 at 37.178 kb on + strand, within HMPREF1058_RS21050 at 37.181 kb on + strand at 37.225 kb on + strand at 37.312 kb on + strand at 37.312 kb on + strand at 37.355 kb on + strand at 37.356 kb on - strand at 37.452 kb on + strand, within HMPREF1058_RS04430 at 37.535 kb on + strand, within HMPREF1058_RS04430 at 37.536 kb on - strand, within HMPREF1058_RS04430 at 37.537 kb on + strand, within HMPREF1058_RS04430 at 37.649 kb on + strand, within HMPREF1058_RS04430 at 37.650 kb on - strand, within HMPREF1058_RS04430 at 37.650 kb on - strand, within HMPREF1058_RS04430 at 37.650 kb on - strand, within HMPREF1058_RS04430 at 37.655 kb on - strand, within HMPREF1058_RS04430 at 37.663 kb on + strand, within HMPREF1058_RS04430 at 37.664 kb on - strand, within HMPREF1058_RS04430 at 37.716 kb on + strand, within HMPREF1058_RS04430 at 37.721 kb on - strand, within HMPREF1058_RS04430 at 37.721 kb on - strand, within HMPREF1058_RS04430 at 37.765 kb on - strand, within HMPREF1058_RS04430 at 37.886 kb on + strand at 37.912 kb on - strand, within HMPREF1058_RS04430 at 37.935 kb on - strand, within HMPREF1058_RS04430 at 37.987 kb on - strand, within HMPREF1058_RS04430 at 38.046 kb on + strand, within HMPREF1058_RS04430 at 38.048 kb on + strand, within HMPREF1058_RS04430 at 38.071 kb on + strand, within HMPREF1058_RS04430 at 38.073 kb on + strand, within HMPREF1058_RS04430 at 38.087 kb on + strand at 38.155 kb on + strand at 38.197 kb on + strand at 38.313 kb on + strand at 38.324 kb on + strand at 38.327 kb on - strand at 38.329 kb on - strand at 38.389 kb on - strand at 38.393 kb on + strand at 38.393 kb on + strand at 38.394 kb on - strand at 38.425 kb on - strand at 38.674 kb on - strand at 38.726 kb on - strand at 38.730 kb on - strand at 38.730 kb on - strand at 38.777 kb on + strand at 38.780 kb on + strand at 38.780 kb on + strand at 38.781 kb on - strand at 38.781 kb on - strand at 38.781 kb on - strand at 38.782 kb on + strand at 38.782 kb on + strand at 38.782 kb on + strand at 38.783 kb on - strand at 38.783 kb on - strand at 38.832 kb on - strand at 38.832 kb on - strand at 38.842 kb on - strand at 38.866 kb on - strand at 38.874 kb on + strand at 38.915 kb on + strand at 39.003 kb on + strand at 39.004 kb on - strand at 39.086 kb on + strand at 39.090 kb on - strand at 39.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 remove 36,480 + -0.7 36,489 - +0.6 36,489 - -0.7 36,499 + +0.9 36,500 + -1.5 36,502 + +0.9 36,514 - +0.3 36,521 + -0.3 36,527 + -1.4 36,528 - +0.2 36,529 + -1.3 36,599 + HMPREF1058_RS04435 0.30 -0.2 36,614 + HMPREF1058_RS04435 0.36 -1.8 36,638 - HMPREF1058_RS04435 0.45 -0.7 36,643 - HMPREF1058_RS04435 0.47 -1.7 36,652 + HMPREF1058_RS04435 0.50 -0.1 36,653 - HMPREF1058_RS04435 0.51 -0.3 36,653 - HMPREF1058_RS04435 0.51 -1.4 36,679 + HMPREF1058_RS04435 0.61 -0.4 36,680 - HMPREF1058_RS04435 0.61 -1.4 36,680 - HMPREF1058_RS04435 0.61 -1.3 36,708 + HMPREF1058_RS04435 0.72 -0.6 36,799 + +0.2 36,938 + -0.4 36,939 - -1.8 37,178 + HMPREF1058_RS21050 0.88 +0.8 37,178 + HMPREF1058_RS21050 0.88 +0.6 37,181 + +0.9 37,225 + +1.2 37,312 + +0.8 37,312 + -1.2 37,355 + +1.2 37,356 - +0.8 37,452 + HMPREF1058_RS04430 0.15 +2.1 37,535 + HMPREF1058_RS04430 0.25 +0.8 37,536 - HMPREF1058_RS04430 0.25 +2.6 37,537 + HMPREF1058_RS04430 0.26 +1.1 37,649 + HMPREF1058_RS04430 0.39 +1.3 37,650 - HMPREF1058_RS04430 0.39 +1.2 37,650 - HMPREF1058_RS04430 0.39 +2.2 37,650 - HMPREF1058_RS04430 0.39 +0.8 37,655 - HMPREF1058_RS04430 0.39 +1.3 37,663 + HMPREF1058_RS04430 0.40 +1.6 37,664 - HMPREF1058_RS04430 0.41 +2.7 37,716 + HMPREF1058_RS04430 0.47 +1.3 37,721 - HMPREF1058_RS04430 0.47 +1.0 37,721 - HMPREF1058_RS04430 0.47 +0.9 37,765 - HMPREF1058_RS04430 0.52 +1.7 37,886 + +0.6 37,912 - HMPREF1058_RS04430 0.70 -0.7 37,935 - HMPREF1058_RS04430 0.73 +0.4 37,987 - HMPREF1058_RS04430 0.79 +0.7 38,046 + HMPREF1058_RS04430 0.86 +1.1 38,048 + HMPREF1058_RS04430 0.86 +0.2 38,071 + HMPREF1058_RS04430 0.89 +1.2 38,073 + HMPREF1058_RS04430 0.89 -1.2 38,087 + -1.7 38,155 + +0.1 38,197 + +0.6 38,313 + -2.6 38,324 + +1.6 38,327 - -0.5 38,329 - -0.6 38,389 - +0.2 38,393 + -1.1 38,393 + -1.4 38,394 - -2.0 38,425 - -1.2 38,674 - -1.0 38,726 - -0.5 38,730 - +0.2 38,730 - -0.1 38,777 + -0.7 38,780 + -0.4 38,780 + -2.0 38,781 - +4.6 38,781 - +1.1 38,781 - -0.2 38,782 + -1.0 38,782 + -1.8 38,782 + +0.1 38,783 - -1.4 38,783 - -2.7 38,832 - -0.7 38,832 - -1.4 38,842 - +2.2 38,866 - -0.8 38,874 + +0.5 38,915 + -1.6 39,003 + +0.7 39,004 - -1.0 39,086 + -0.9 39,090 - -0.3 39,144 - +1.6
Or see this region's nucleotide sequence