Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04445 and HMPREF1058_RS21525 are separated by 185 nucleotides HMPREF1058_RS21525 and HMPREF1058_RS04440 are separated by 376 nucleotides
HMPREF1058_RS04445: HMPREF1058_RS04445 - porin family protein, at 33,709 to 34,106
_RS04445
HMPREF1058_RS21525: HMPREF1058_RS21525 - hypothetical protein, at 34,292 to 34,531
_RS21525
HMPREF1058_RS04440: HMPREF1058_RS04440 - hypothetical protein, at 34,908 to 36,029
_RS04440
Position (kb) 34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 33.794 kb on + strand, within HMPREF1058_RS04445 at 33.794 kb on + strand, within HMPREF1058_RS04445 at 34.128 kb on + strand at 34.129 kb on - strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.195 kb on - strand at 34.226 kb on + strand at 34.271 kb on - strand at 34.300 kb on - strand at 34.317 kb on - strand, within HMPREF1058_RS21525 at 34.350 kb on + strand, within HMPREF1058_RS21525 at 34.370 kb on - strand, within HMPREF1058_RS21525 at 34.403 kb on - strand, within HMPREF1058_RS21525 at 34.474 kb on + strand, within HMPREF1058_RS21525 at 34.483 kb on + strand, within HMPREF1058_RS21525 at 34.594 kb on - strand at 34.682 kb on + strand at 34.694 kb on - strand at 34.718 kb on - strand at 34.802 kb on - strand at 34.807 kb on + strand at 34.807 kb on + strand at 34.808 kb on - strand at 34.852 kb on + strand at 34.910 kb on - strand at 34.913 kb on + strand at 34.914 kb on - strand at 34.914 kb on - strand at 34.940 kb on + strand at 34.941 kb on - strand at 34.951 kb on + strand at 34.951 kb on + strand at 34.968 kb on + strand at 35.121 kb on + strand, within HMPREF1058_RS04440 at 35.126 kb on - strand, within HMPREF1058_RS04440 at 35.135 kb on + strand, within HMPREF1058_RS04440 at 35.250 kb on + strand, within HMPREF1058_RS04440 at 35.274 kb on + strand, within HMPREF1058_RS04440 at 35.274 kb on + strand, within HMPREF1058_RS04440 at 35.304 kb on - strand, within HMPREF1058_RS04440 at 35.371 kb on + strand, within HMPREF1058_RS04440 at 35.371 kb on + strand, within HMPREF1058_RS04440 at 35.371 kb on + strand, within HMPREF1058_RS04440 at 35.371 kb on + strand, within HMPREF1058_RS04440 at 35.372 kb on - strand, within HMPREF1058_RS04440 at 35.372 kb on - strand, within HMPREF1058_RS04440 at 35.440 kb on - strand, within HMPREF1058_RS04440 at 35.440 kb on - strand, within HMPREF1058_RS04440 at 35.459 kb on + strand, within HMPREF1058_RS04440 at 35.460 kb on - strand, within HMPREF1058_RS04440 at 35.487 kb on + strand, within HMPREF1058_RS04440 at 35.490 kb on - strand, within HMPREF1058_RS04440 at 35.493 kb on - strand, within HMPREF1058_RS04440 at 35.493 kb on - strand, within HMPREF1058_RS04440 at 35.496 kb on - strand, within HMPREF1058_RS04440 at 35.501 kb on + strand, within HMPREF1058_RS04440 at 35.501 kb on + strand, within HMPREF1058_RS04440 at 35.502 kb on - strand at 35.502 kb on - strand, within HMPREF1058_RS04440 at 35.502 kb on - strand, within HMPREF1058_RS04440 at 35.502 kb on - strand, within HMPREF1058_RS04440
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 remove 33,794 + HMPREF1058_RS04445 0.21 -0.3 33,794 + HMPREF1058_RS04445 0.21 +1.1 34,128 + -0.7 34,129 - -0.0 34,194 + -0.1 34,194 + -0.7 34,195 - +0.6 34,226 + +0.2 34,271 - -2.7 34,300 - +0.2 34,317 - HMPREF1058_RS21525 0.10 -3.3 34,350 + HMPREF1058_RS21525 0.24 -1.1 34,370 - HMPREF1058_RS21525 0.33 -0.8 34,403 - HMPREF1058_RS21525 0.46 -2.3 34,474 + HMPREF1058_RS21525 0.76 -2.0 34,483 + HMPREF1058_RS21525 0.80 -0.5 34,594 - -1.5 34,682 + +0.4 34,694 - +1.7 34,718 - +1.2 34,802 - +0.6 34,807 + -0.6 34,807 + -1.9 34,808 - +0.3 34,852 + -0.4 34,910 - +2.4 34,913 + +0.6 34,914 - +3.4 34,914 - +0.1 34,940 + -0.3 34,941 - -1.3 34,951 + +0.7 34,951 + -2.6 34,968 + -1.0 35,121 + HMPREF1058_RS04440 0.19 +1.8 35,126 - HMPREF1058_RS04440 0.19 +1.5 35,135 + HMPREF1058_RS04440 0.20 -0.1 35,250 + HMPREF1058_RS04440 0.30 -0.3 35,274 + HMPREF1058_RS04440 0.33 -0.3 35,274 + HMPREF1058_RS04440 0.33 -1.3 35,304 - HMPREF1058_RS04440 0.35 -1.3 35,371 + HMPREF1058_RS04440 0.41 +0.7 35,371 + HMPREF1058_RS04440 0.41 +1.1 35,371 + HMPREF1058_RS04440 0.41 -0.9 35,371 + HMPREF1058_RS04440 0.41 +0.7 35,372 - HMPREF1058_RS04440 0.41 +0.7 35,372 - HMPREF1058_RS04440 0.41 +0.3 35,440 - HMPREF1058_RS04440 0.47 -1.3 35,440 - HMPREF1058_RS04440 0.47 -0.7 35,459 + HMPREF1058_RS04440 0.49 +0.3 35,460 - HMPREF1058_RS04440 0.49 -0.7 35,487 + HMPREF1058_RS04440 0.52 +0.4 35,490 - HMPREF1058_RS04440 0.52 -0.9 35,493 - HMPREF1058_RS04440 0.52 -0.6 35,493 - HMPREF1058_RS04440 0.52 -1.9 35,496 - HMPREF1058_RS04440 0.52 +0.1 35,501 + HMPREF1058_RS04440 0.53 -0.5 35,501 + HMPREF1058_RS04440 0.53 -0.4 35,502 - +0.5 35,502 - HMPREF1058_RS04440 0.53 -1.5 35,502 - HMPREF1058_RS04440 0.53 -0.3 35,502 - HMPREF1058_RS04440 0.53 -1.7
Or see this region's nucleotide sequence