Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04425 and HMPREF1058_RS04420 are separated by 33 nucleotides HMPREF1058_RS04420 and HMPREF1058_RS04415 are separated by 166 nucleotides
HMPREF1058_RS04425: HMPREF1058_RS04425 - mechanosensitive ion channel, at 39,079 to 39,924
_RS04425
HMPREF1058_RS04420: HMPREF1058_RS04420 - PorT family protein, at 39,958 to 40,635
_RS04420
HMPREF1058_RS04415: HMPREF1058_RS04415 - ion transporter, at 40,802 to 41,563
_RS04415
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 39.818 kb on - strand, within HMPREF1058_RS04425 at 39.830 kb on + strand, within HMPREF1058_RS04425 at 39.837 kb on + strand, within HMPREF1058_RS04425 at 39.840 kb on + strand at 39.854 kb on - strand at 39.865 kb on - strand at 39.922 kb on + strand at 39.933 kb on + strand at 40.075 kb on - strand, within HMPREF1058_RS04420 at 40.131 kb on + strand, within HMPREF1058_RS04420 at 40.230 kb on + strand, within HMPREF1058_RS04420 at 40.230 kb on + strand, within HMPREF1058_RS04420 at 40.381 kb on - strand, within HMPREF1058_RS04420 at 40.382 kb on + strand, within HMPREF1058_RS04420 at 40.382 kb on + strand, within HMPREF1058_RS04420 at 40.397 kb on + strand, within HMPREF1058_RS04420 at 40.398 kb on - strand, within HMPREF1058_RS04420 at 40.401 kb on + strand, within HMPREF1058_RS04420 at 40.481 kb on + strand, within HMPREF1058_RS04420 at 40.487 kb on + strand, within HMPREF1058_RS04420 at 40.498 kb on + strand, within HMPREF1058_RS04420 at 40.500 kb on + strand, within HMPREF1058_RS04420 at 40.536 kb on - strand, within HMPREF1058_RS04420 at 40.536 kb on - strand, within HMPREF1058_RS04420 at 40.536 kb on - strand, within HMPREF1058_RS04420 at 40.559 kb on + strand, within HMPREF1058_RS04420 at 40.560 kb on - strand, within HMPREF1058_RS04420 at 40.624 kb on + strand at 40.625 kb on - strand at 40.704 kb on + strand at 40.719 kb on + strand at 40.782 kb on - strand at 40.885 kb on + strand, within HMPREF1058_RS04415 at 40.925 kb on + strand, within HMPREF1058_RS04415 at 40.925 kb on + strand, within HMPREF1058_RS04415 at 40.926 kb on - strand, within HMPREF1058_RS04415 at 40.932 kb on + strand, within HMPREF1058_RS04415 at 40.932 kb on + strand, within HMPREF1058_RS04415 at 40.933 kb on - strand, within HMPREF1058_RS04415 at 40.949 kb on - strand, within HMPREF1058_RS04415 at 40.953 kb on - strand, within HMPREF1058_RS04415 at 40.953 kb on - strand, within HMPREF1058_RS04415 at 40.982 kb on + strand, within HMPREF1058_RS04415 at 41.052 kb on - strand, within HMPREF1058_RS04415 at 41.052 kb on - strand, within HMPREF1058_RS04415 at 41.053 kb on + strand, within HMPREF1058_RS04415 at 41.067 kb on - strand, within HMPREF1058_RS04415 at 41.111 kb on + strand, within HMPREF1058_RS04415 at 41.117 kb on + strand, within HMPREF1058_RS04415 at 41.151 kb on + strand, within HMPREF1058_RS04415 at 41.178 kb on + strand, within HMPREF1058_RS04415 at 41.261 kb on - strand, within HMPREF1058_RS04415 at 41.300 kb on + strand, within HMPREF1058_RS04415 at 41.302 kb on + strand, within HMPREF1058_RS04415 at 41.438 kb on - strand, within HMPREF1058_RS04415 at 41.448 kb on + strand, within HMPREF1058_RS04415 at 41.554 kb on + strand at 41.613 kb on + strand at 41.623 kb on - strand at 41.663 kb on + strand at 41.663 kb on + strand at 41.664 kb on - strand at 41.715 kb on + strand at 41.716 kb on - strand at 41.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 remove 39,818 - HMPREF1058_RS04425 0.87 +0.3 39,830 + HMPREF1058_RS04425 0.89 +0.4 39,837 + HMPREF1058_RS04425 0.90 +0.2 39,840 + +0.1 39,854 - -0.0 39,865 - -1.7 39,922 + -1.5 39,933 + -0.3 40,075 - HMPREF1058_RS04420 0.17 +1.7 40,131 + HMPREF1058_RS04420 0.26 +0.9 40,230 + HMPREF1058_RS04420 0.40 -0.1 40,230 + HMPREF1058_RS04420 0.40 +0.3 40,381 - HMPREF1058_RS04420 0.62 +0.7 40,382 + HMPREF1058_RS04420 0.63 +0.8 40,382 + HMPREF1058_RS04420 0.63 -1.0 40,397 + HMPREF1058_RS04420 0.65 -0.3 40,398 - HMPREF1058_RS04420 0.65 -0.6 40,401 + HMPREF1058_RS04420 0.65 +2.5 40,481 + HMPREF1058_RS04420 0.77 -2.5 40,487 + HMPREF1058_RS04420 0.78 +0.7 40,498 + HMPREF1058_RS04420 0.80 +0.9 40,500 + HMPREF1058_RS04420 0.80 +0.2 40,536 - HMPREF1058_RS04420 0.85 +2.4 40,536 - HMPREF1058_RS04420 0.85 +1.1 40,536 - HMPREF1058_RS04420 0.85 +0.3 40,559 + HMPREF1058_RS04420 0.89 +0.3 40,560 - HMPREF1058_RS04420 0.89 -0.5 40,624 + +0.8 40,625 - +0.4 40,704 + +0.1 40,719 + +0.7 40,782 - +2.1 40,885 + HMPREF1058_RS04415 0.11 -0.0 40,925 + HMPREF1058_RS04415 0.16 +0.9 40,925 + HMPREF1058_RS04415 0.16 -0.3 40,926 - HMPREF1058_RS04415 0.16 +0.8 40,932 + HMPREF1058_RS04415 0.17 +1.8 40,932 + HMPREF1058_RS04415 0.17 -0.7 40,933 - HMPREF1058_RS04415 0.17 -0.0 40,949 - HMPREF1058_RS04415 0.19 +0.8 40,953 - HMPREF1058_RS04415 0.20 +0.3 40,953 - HMPREF1058_RS04415 0.20 +0.4 40,982 + HMPREF1058_RS04415 0.24 +0.9 41,052 - HMPREF1058_RS04415 0.33 +0.8 41,052 - HMPREF1058_RS04415 0.33 +0.9 41,053 + HMPREF1058_RS04415 0.33 +0.7 41,067 - HMPREF1058_RS04415 0.35 -0.9 41,111 + HMPREF1058_RS04415 0.41 -0.1 41,117 + HMPREF1058_RS04415 0.41 -3.3 41,151 + HMPREF1058_RS04415 0.46 -1.0 41,178 + HMPREF1058_RS04415 0.49 -0.7 41,261 - HMPREF1058_RS04415 0.60 -0.3 41,300 + HMPREF1058_RS04415 0.65 +0.1 41,302 + HMPREF1058_RS04415 0.66 +1.5 41,438 - HMPREF1058_RS04415 0.83 -0.4 41,448 + HMPREF1058_RS04415 0.85 +0.2 41,554 + -1.6 41,613 + -1.2 41,623 - -0.9 41,663 + +0.6 41,663 + -0.3 41,664 - -0.0 41,715 + +0.5 41,716 - -1.3 41,723 - -2.4
Or see this region's nucleotide sequence