Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10640 and HMPREF1058_RS10635 are separated by 743 nucleotides HMPREF1058_RS10635 and HMPREF1058_RS10630 are separated by 50 nucleotides
HMPREF1058_RS10640: HMPREF1058_RS10640 - outer membrane lipoprotein carrier protein LolA, at 611,205 to 611,840
_RS10640
HMPREF1058_RS10635: HMPREF1058_RS10635 - polysaccharide deacetylase family protein, at 612,584 to 613,276
_RS10635
HMPREF1058_RS10630: HMPREF1058_RS10630 - KilA-N domain-containing protein, at 613,327 to 614,181
_RS10630
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 611.627 kb on + strand, within HMPREF1058_RS10640 at 611.632 kb on + strand, within HMPREF1058_RS10640 at 611.633 kb on - strand, within HMPREF1058_RS10640 at 611.678 kb on - strand, within HMPREF1058_RS10640 at 611.802 kb on - strand at 611.823 kb on + strand at 611.885 kb on - strand at 611.887 kb on - strand at 611.919 kb on - strand at 611.964 kb on - strand at 612.023 kb on - strand at 612.156 kb on + strand at 612.186 kb on + strand at 612.269 kb on + strand at 612.316 kb on - strand at 612.344 kb on + strand at 612.345 kb on - strand at 612.345 kb on - strand at 612.482 kb on + strand at 612.482 kb on + strand at 612.506 kb on - strand at 612.628 kb on + strand at 612.628 kb on + strand at 612.807 kb on + strand, within HMPREF1058_RS10635 at 612.807 kb on + strand, within HMPREF1058_RS10635 at 612.807 kb on + strand, within HMPREF1058_RS10635 at 612.807 kb on + strand, within HMPREF1058_RS10635 at 612.946 kb on + strand, within HMPREF1058_RS10635 at 612.949 kb on - strand, within HMPREF1058_RS10635 at 612.949 kb on - strand, within HMPREF1058_RS10635 at 613.149 kb on - strand, within HMPREF1058_RS10635 at 613.191 kb on + strand, within HMPREF1058_RS10635 at 613.196 kb on - strand, within HMPREF1058_RS10635 at 613.333 kb on + strand at 613.347 kb on + strand at 613.441 kb on - strand, within HMPREF1058_RS10630 at 613.441 kb on - strand, within HMPREF1058_RS10630 at 613.523 kb on - strand, within HMPREF1058_RS10630 at 613.539 kb on + strand, within HMPREF1058_RS10630 at 613.540 kb on - strand, within HMPREF1058_RS10630 at 613.545 kb on + strand, within HMPREF1058_RS10630 at 613.587 kb on + strand, within HMPREF1058_RS10630 at 613.672 kb on - strand, within HMPREF1058_RS10630 at 613.692 kb on + strand, within HMPREF1058_RS10630 at 613.714 kb on - strand, within HMPREF1058_RS10630 at 613.716 kb on + strand, within HMPREF1058_RS10630 at 613.716 kb on + strand, within HMPREF1058_RS10630 at 613.716 kb on + strand, within HMPREF1058_RS10630 at 613.745 kb on - strand, within HMPREF1058_RS10630 at 613.803 kb on + strand, within HMPREF1058_RS10630 at 614.035 kb on - strand, within HMPREF1058_RS10630 at 614.035 kb on - strand, within HMPREF1058_RS10630 at 614.038 kb on - strand, within HMPREF1058_RS10630 at 614.059 kb on + strand, within HMPREF1058_RS10630 at 614.062 kb on - strand, within HMPREF1058_RS10630 at 614.067 kb on - strand, within HMPREF1058_RS10630 at 614.067 kb on - strand, within HMPREF1058_RS10630 at 614.067 kb on - strand, within HMPREF1058_RS10630 at 614.074 kb on - strand, within HMPREF1058_RS10630 at 614.115 kb on + strand at 614.115 kb on + strand at 614.118 kb on - strand at 614.124 kb on + strand at 614.138 kb on - strand at 614.150 kb on - strand at 614.152 kb on - strand at 614.244 kb on + strand at 614.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 remove 611,627 + HMPREF1058_RS10640 0.66 +0.4 611,632 + HMPREF1058_RS10640 0.67 -0.5 611,633 - HMPREF1058_RS10640 0.67 +1.0 611,678 - HMPREF1058_RS10640 0.74 +1.2 611,802 - +0.1 611,823 + +0.5 611,885 - +0.5 611,887 - -0.0 611,919 - -0.7 611,964 - +0.4 612,023 - +0.2 612,156 + +0.0 612,186 + +0.3 612,269 + +0.9 612,316 - -0.0 612,344 + +0.3 612,345 - +0.1 612,345 - -0.3 612,482 + -1.4 612,482 + +0.6 612,506 - +1.2 612,628 + +1.2 612,628 + +0.4 612,807 + HMPREF1058_RS10635 0.32 +0.5 612,807 + HMPREF1058_RS10635 0.32 +1.5 612,807 + HMPREF1058_RS10635 0.32 -0.2 612,807 + HMPREF1058_RS10635 0.32 -1.7 612,946 + HMPREF1058_RS10635 0.52 -0.2 612,949 - HMPREF1058_RS10635 0.53 +0.2 612,949 - HMPREF1058_RS10635 0.53 -2.0 613,149 - HMPREF1058_RS10635 0.82 -1.1 613,191 + HMPREF1058_RS10635 0.88 -0.3 613,196 - HMPREF1058_RS10635 0.88 +1.0 613,333 + -0.0 613,347 + +0.3 613,441 - HMPREF1058_RS10630 0.13 +0.6 613,441 - HMPREF1058_RS10630 0.13 +0.2 613,523 - HMPREF1058_RS10630 0.23 -0.0 613,539 + HMPREF1058_RS10630 0.25 -1.5 613,540 - HMPREF1058_RS10630 0.25 +0.6 613,545 + HMPREF1058_RS10630 0.25 +0.7 613,587 + HMPREF1058_RS10630 0.30 -1.2 613,672 - HMPREF1058_RS10630 0.40 +0.3 613,692 + HMPREF1058_RS10630 0.43 -0.4 613,714 - HMPREF1058_RS10630 0.45 -2.4 613,716 + HMPREF1058_RS10630 0.45 -0.2 613,716 + HMPREF1058_RS10630 0.45 -1.5 613,716 + HMPREF1058_RS10630 0.45 +0.2 613,745 - HMPREF1058_RS10630 0.49 -0.0 613,803 + HMPREF1058_RS10630 0.56 +0.3 614,035 - HMPREF1058_RS10630 0.83 -2.2 614,035 - HMPREF1058_RS10630 0.83 +0.6 614,038 - HMPREF1058_RS10630 0.83 -0.0 614,059 + HMPREF1058_RS10630 0.86 +0.6 614,062 - HMPREF1058_RS10630 0.86 +0.2 614,067 - HMPREF1058_RS10630 0.87 -3.4 614,067 - HMPREF1058_RS10630 0.87 -1.7 614,067 - HMPREF1058_RS10630 0.87 -1.8 614,074 - HMPREF1058_RS10630 0.87 -1.2 614,115 + +0.5 614,115 + -1.8 614,118 - +3.4 614,124 + -1.9 614,138 - -2.9 614,150 - -0.4 614,152 - +1.6 614,244 + -0.2 614,276 - -0.0
Or see this region's nucleotide sequence