Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08045

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08050 and HMPREF1058_RS08045 are separated by 5 nucleotidesHMPREF1058_RS08045 and HMPREF1058_RS08040 are separated by 132 nucleotides HMPREF1058_RS08050: HMPREF1058_RS08050 - bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase, at 65,317 to 66,702 _RS08050 HMPREF1058_RS08045: HMPREF1058_RS08045 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 66,708 to 67,748 _RS08045 HMPREF1058_RS08040: HMPREF1058_RS08040 - HD domain-containing protein, at 67,881 to 69,116 _RS08040 Position (kb) 66 67 68Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 67.767 kb on - strandat 67.857 kb on - strandat 67.857 kb on - strandat 67.914 kb on + strandat 67.917 kb on + strandat 68.039 kb on + strand, within HMPREF1058_RS08040at 68.040 kb on - strand, within HMPREF1058_RS08040at 68.335 kb on + strand, within HMPREF1058_RS08040at 68.383 kb on - strand, within HMPREF1058_RS08040at 68.455 kb on + strand, within HMPREF1058_RS08040at 68.456 kb on - strand, within HMPREF1058_RS08040at 68.467 kb on + strand, within HMPREF1058_RS08040at 68.507 kb on - strand, within HMPREF1058_RS08040at 68.527 kb on - strand, within HMPREF1058_RS08040at 68.545 kb on - strand, within HMPREF1058_RS08040at 68.580 kb on - strand, within HMPREF1058_RS08040at 68.684 kb on - strand, within HMPREF1058_RS08040

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6
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67,767 - -5.3
67,857 - +10.8
67,857 - +10.5
67,914 + -1.3
67,917 + -4.3
68,039 + HMPREF1058_RS08040 0.13 -4.2
68,040 - HMPREF1058_RS08040 0.13 +10.3
68,335 + HMPREF1058_RS08040 0.37 -3.3
68,383 - HMPREF1058_RS08040 0.41 +2.9
68,455 + HMPREF1058_RS08040 0.46 -1.7
68,456 - HMPREF1058_RS08040 0.47 +1.6
68,467 + HMPREF1058_RS08040 0.47 -0.9
68,507 - HMPREF1058_RS08040 0.51 -0.4
68,527 - HMPREF1058_RS08040 0.52 +2.2
68,545 - HMPREF1058_RS08040 0.54 +0.0
68,580 - HMPREF1058_RS08040 0.57 +0.6
68,684 - HMPREF1058_RS08040 0.65 +0.7

Or see this region's nucleotide sequence