Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03810 and HMPREF1058_RS03805 are separated by 9 nucleotides HMPREF1058_RS03805 and HMPREF1058_RS03800 are separated by 246 nucleotides HMPREF1058_RS03800 and HMPREF1058_RS03795 are separated by 198 nucleotides
HMPREF1058_RS03810: HMPREF1058_RS03810 - flavin reductase family protein, at 181,439 to 182,026
_RS03810
HMPREF1058_RS03805: HMPREF1058_RS03805 - PorT family protein, at 182,036 to 182,755
_RS03805
HMPREF1058_RS03800: HMPREF1058_RS03800 - serine hydroxymethyltransferase, at 183,002 to 184,282
_RS03800
HMPREF1058_RS03795: HMPREF1058_RS03795 - MATE family efflux transporter, at 184,481 to 185,824
_RS03795
Position (kb) 183
184
185 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 182.052 kb on + strand at 182.174 kb on - strand, within HMPREF1058_RS03805 at 182.190 kb on + strand, within HMPREF1058_RS03805 at 182.227 kb on + strand, within HMPREF1058_RS03805 at 182.297 kb on - strand, within HMPREF1058_RS03805 at 182.300 kb on + strand, within HMPREF1058_RS03805 at 182.300 kb on + strand, within HMPREF1058_RS03805 at 182.301 kb on - strand, within HMPREF1058_RS03805 at 182.306 kb on - strand, within HMPREF1058_RS03805 at 182.309 kb on + strand, within HMPREF1058_RS03805 at 182.403 kb on + strand, within HMPREF1058_RS03805 at 182.407 kb on + strand, within HMPREF1058_RS03805 at 182.413 kb on - strand, within HMPREF1058_RS03805 at 182.422 kb on + strand, within HMPREF1058_RS03805 at 182.423 kb on - strand, within HMPREF1058_RS03805 at 182.484 kb on + strand, within HMPREF1058_RS03805 at 182.484 kb on + strand, within HMPREF1058_RS03805 at 182.562 kb on + strand, within HMPREF1058_RS03805 at 182.563 kb on - strand, within HMPREF1058_RS03805 at 182.596 kb on + strand, within HMPREF1058_RS03805 at 182.601 kb on + strand, within HMPREF1058_RS03805 at 182.601 kb on + strand, within HMPREF1058_RS03805 at 182.601 kb on + strand, within HMPREF1058_RS03805 at 182.728 kb on - strand at 182.772 kb on + strand at 182.785 kb on + strand at 182.798 kb on - strand at 182.857 kb on + strand at 182.861 kb on - strand at 182.910 kb on - strand at 182.933 kb on - strand at 182.939 kb on + strand at 183.105 kb on + strand at 183.106 kb on - strand at 183.140 kb on + strand, within HMPREF1058_RS03800 at 183.141 kb on - strand, within HMPREF1058_RS03800 at 183.141 kb on - strand, within HMPREF1058_RS03800 at 183.170 kb on + strand, within HMPREF1058_RS03800 at 183.255 kb on + strand, within HMPREF1058_RS03800 at 183.255 kb on + strand, within HMPREF1058_RS03800 at 183.255 kb on + strand, within HMPREF1058_RS03800 at 183.256 kb on - strand, within HMPREF1058_RS03800 at 183.256 kb on - strand, within HMPREF1058_RS03800 at 183.292 kb on - strand, within HMPREF1058_RS03800 at 183.397 kb on + strand, within HMPREF1058_RS03800 at 183.410 kb on + strand, within HMPREF1058_RS03800 at 183.438 kb on + strand, within HMPREF1058_RS03800 at 183.510 kb on - strand, within HMPREF1058_RS03800 at 183.528 kb on - strand, within HMPREF1058_RS03800 at 183.536 kb on - strand, within HMPREF1058_RS03800 at 183.636 kb on - strand, within HMPREF1058_RS03800 at 183.636 kb on - strand, within HMPREF1058_RS03800 at 183.664 kb on + strand, within HMPREF1058_RS03800 at 183.786 kb on + strand, within HMPREF1058_RS03800 at 183.891 kb on + strand, within HMPREF1058_RS03800 at 183.892 kb on - strand, within HMPREF1058_RS03800 at 183.940 kb on + strand, within HMPREF1058_RS03800 at 184.219 kb on - strand at 184.280 kb on + strand at 184.300 kb on + strand at 184.303 kb on - strand at 184.309 kb on - strand at 184.309 kb on - strand at 184.387 kb on + strand at 184.387 kb on + strand at 184.577 kb on + strand at 184.579 kb on + strand at 184.579 kb on + strand at 184.580 kb on - strand at 184.580 kb on - strand at 184.655 kb on - strand, within HMPREF1058_RS03795 at 184.673 kb on - strand, within HMPREF1058_RS03795 at 184.693 kb on - strand, within HMPREF1058_RS03795 at 184.782 kb on + strand, within HMPREF1058_RS03795 at 184.817 kb on - strand, within HMPREF1058_RS03795 at 184.840 kb on + strand, within HMPREF1058_RS03795 at 184.841 kb on - strand, within HMPREF1058_RS03795 at 184.863 kb on + strand, within HMPREF1058_RS03795 at 185.011 kb on - strand, within HMPREF1058_RS03795 at 185.014 kb on - strand, within HMPREF1058_RS03795 at 185.094 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.180 kb on - strand, within HMPREF1058_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4 remove 182,052 + -0.5 182,174 - HMPREF1058_RS03805 0.19 -3.1 182,190 + HMPREF1058_RS03805 0.21 -0.7 182,227 + HMPREF1058_RS03805 0.27 -1.4 182,297 - HMPREF1058_RS03805 0.36 -2.7 182,300 + HMPREF1058_RS03805 0.37 -0.7 182,300 + HMPREF1058_RS03805 0.37 -0.3 182,301 - HMPREF1058_RS03805 0.37 -2.0 182,306 - HMPREF1058_RS03805 0.38 -1.5 182,309 + HMPREF1058_RS03805 0.38 -3.9 182,403 + HMPREF1058_RS03805 0.51 -3.1 182,407 + HMPREF1058_RS03805 0.52 -2.1 182,413 - HMPREF1058_RS03805 0.52 -1.8 182,422 + HMPREF1058_RS03805 0.54 -3.2 182,423 - HMPREF1058_RS03805 0.54 -2.2 182,484 + HMPREF1058_RS03805 0.62 -3.5 182,484 + HMPREF1058_RS03805 0.62 -1.8 182,562 + HMPREF1058_RS03805 0.73 -2.3 182,563 - HMPREF1058_RS03805 0.73 -2.4 182,596 + HMPREF1058_RS03805 0.78 -1.5 182,601 + HMPREF1058_RS03805 0.78 -2.7 182,601 + HMPREF1058_RS03805 0.78 -1.3 182,601 + HMPREF1058_RS03805 0.78 -0.5 182,728 - -1.4 182,772 + +0.9 182,785 + +1.4 182,798 - +0.2 182,857 + -0.8 182,861 - -0.5 182,910 - -0.7 182,933 - +0.0 182,939 + -0.2 183,105 + -1.9 183,106 - -1.0 183,140 + HMPREF1058_RS03800 0.11 -1.7 183,141 - HMPREF1058_RS03800 0.11 -1.1 183,141 - HMPREF1058_RS03800 0.11 -1.4 183,170 + HMPREF1058_RS03800 0.13 -2.7 183,255 + HMPREF1058_RS03800 0.20 -2.2 183,255 + HMPREF1058_RS03800 0.20 -1.6 183,255 + HMPREF1058_RS03800 0.20 -2.4 183,256 - HMPREF1058_RS03800 0.20 -2.4 183,256 - HMPREF1058_RS03800 0.20 -1.8 183,292 - HMPREF1058_RS03800 0.23 -3.8 183,397 + HMPREF1058_RS03800 0.31 -2.0 183,410 + HMPREF1058_RS03800 0.32 -3.0 183,438 + HMPREF1058_RS03800 0.34 -2.3 183,510 - HMPREF1058_RS03800 0.40 -2.5 183,528 - HMPREF1058_RS03800 0.41 -2.0 183,536 - HMPREF1058_RS03800 0.42 +0.3 183,636 - HMPREF1058_RS03800 0.49 -1.6 183,636 - HMPREF1058_RS03800 0.49 -3.3 183,664 + HMPREF1058_RS03800 0.52 -0.5 183,786 + HMPREF1058_RS03800 0.61 -1.8 183,891 + HMPREF1058_RS03800 0.69 -1.9 183,892 - HMPREF1058_RS03800 0.69 -1.1 183,940 + HMPREF1058_RS03800 0.73 -1.7 184,219 - -2.8 184,280 + +0.0 184,300 + +1.1 184,303 - +1.3 184,309 - -0.7 184,309 - +0.0 184,387 + +2.6 184,387 + +0.3 184,577 + +0.4 184,579 + -0.7 184,579 + -0.5 184,580 - +0.2 184,580 - +0.7 184,655 - HMPREF1058_RS03795 0.13 -1.2 184,673 - HMPREF1058_RS03795 0.14 +0.2 184,693 - HMPREF1058_RS03795 0.16 +0.7 184,782 + HMPREF1058_RS03795 0.22 +0.2 184,817 - HMPREF1058_RS03795 0.25 -0.1 184,840 + HMPREF1058_RS03795 0.27 +0.6 184,841 - HMPREF1058_RS03795 0.27 -1.4 184,863 + HMPREF1058_RS03795 0.28 +2.1 185,011 - HMPREF1058_RS03795 0.39 -1.3 185,014 - HMPREF1058_RS03795 0.40 -0.4 185,094 + HMPREF1058_RS03795 0.46 +1.0 185,179 + HMPREF1058_RS03795 0.52 +1.0 185,179 + HMPREF1058_RS03795 0.52 -1.0 185,179 + HMPREF1058_RS03795 0.52 -0.7 185,179 + HMPREF1058_RS03795 0.52 -0.9 185,180 - HMPREF1058_RS03795 0.52 +0.3
Or see this region's nucleotide sequence