Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00570 and HMPREF1058_RS00565 are separated by 4 nucleotides HMPREF1058_RS00565 and HMPREF1058_RS00560 are separated by 294 nucleotides HMPREF1058_RS00560 and HMPREF1058_RS00555 are separated by 5 nucleotides
HMPREF1058_RS00570: HMPREF1058_RS00570 - HD domain-containing protein, at 49,403 to 50,884
_RS00570
HMPREF1058_RS00565: HMPREF1058_RS00565 - hemolysin III family protein, at 50,889 to 51,524
_RS00565
HMPREF1058_RS00560: HMPREF1058_RS00560 - anaerobic ribonucleoside triphosphate reductase, at 51,819 to 54,095
_RS00560
HMPREF1058_RS00555: HMPREF1058_RS00555 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 54,101 to 54,559
_RS00555
Position (kb) 51
52
53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 50.865 kb on + strand at 50.865 kb on + strand at 50.897 kb on - strand at 50.956 kb on + strand, within HMPREF1058_RS00565 at 50.957 kb on - strand, within HMPREF1058_RS00565 at 51.041 kb on - strand, within HMPREF1058_RS00565 at 51.060 kb on + strand, within HMPREF1058_RS00565 at 51.061 kb on - strand, within HMPREF1058_RS00565 at 51.162 kb on + strand, within HMPREF1058_RS00565 at 51.162 kb on + strand, within HMPREF1058_RS00565 at 51.221 kb on + strand, within HMPREF1058_RS00565 at 51.259 kb on + strand, within HMPREF1058_RS00565 at 51.307 kb on - strand, within HMPREF1058_RS00565 at 51.308 kb on + strand, within HMPREF1058_RS00565 at 51.309 kb on - strand, within HMPREF1058_RS00565 at 51.309 kb on - strand, within HMPREF1058_RS00565 at 51.311 kb on - strand, within HMPREF1058_RS00565 at 51.374 kb on + strand, within HMPREF1058_RS00565 at 51.405 kb on + strand, within HMPREF1058_RS00565 at 51.406 kb on - strand, within HMPREF1058_RS00565 at 51.406 kb on - strand, within HMPREF1058_RS00565 at 51.449 kb on + strand, within HMPREF1058_RS00565 at 51.754 kb on + strand at 51.754 kb on + strand at 52.043 kb on - strand at 52.065 kb on + strand, within HMPREF1058_RS00560 at 52.068 kb on - strand, within HMPREF1058_RS00560 at 52.251 kb on - strand, within HMPREF1058_RS00560 at 52.780 kb on + strand, within HMPREF1058_RS00560 at 52.878 kb on + strand, within HMPREF1058_RS00560 at 53.036 kb on + strand, within HMPREF1058_RS00560 at 53.150 kb on - strand, within HMPREF1058_RS00560 at 53.993 kb on + strand at 53.993 kb on + strand at 53.994 kb on - strand at 54.594 kb on + strand at 54.596 kb on + strand at 54.755 kb on + strand at 54.755 kb on + strand at 54.756 kb on - strand at 54.764 kb on - strand at 54.769 kb on + strand at 54.797 kb on + strand at 54.798 kb on - strand at 54.798 kb on - strand at 54.804 kb on - strand at 54.806 kb on + strand at 54.814 kb on - strand at 54.855 kb on + strand at 54.856 kb on - strand at 54.859 kb on + strand at 54.859 kb on + strand at 54.997 kb on - strand at 55.029 kb on - strand at 55.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4 remove 50,865 + -1.0 50,865 + -2.0 50,897 - +0.1 50,956 + HMPREF1058_RS00565 0.11 -1.3 50,957 - HMPREF1058_RS00565 0.11 -0.2 51,041 - HMPREF1058_RS00565 0.24 -0.9 51,060 + HMPREF1058_RS00565 0.27 +0.1 51,061 - HMPREF1058_RS00565 0.27 -1.0 51,162 + HMPREF1058_RS00565 0.43 +0.1 51,162 + HMPREF1058_RS00565 0.43 +0.5 51,221 + HMPREF1058_RS00565 0.52 +0.7 51,259 + HMPREF1058_RS00565 0.58 -2.0 51,307 - HMPREF1058_RS00565 0.66 +0.1 51,308 + HMPREF1058_RS00565 0.66 -0.4 51,309 - HMPREF1058_RS00565 0.66 +0.0 51,309 - HMPREF1058_RS00565 0.66 +0.7 51,311 - HMPREF1058_RS00565 0.66 -0.5 51,374 + HMPREF1058_RS00565 0.76 -0.3 51,405 + HMPREF1058_RS00565 0.81 -1.1 51,406 - HMPREF1058_RS00565 0.81 -0.9 51,406 - HMPREF1058_RS00565 0.81 +0.2 51,449 + HMPREF1058_RS00565 0.88 -0.1 51,754 + +0.4 51,754 + -1.5 52,043 - -0.8 52,065 + HMPREF1058_RS00560 0.11 -3.0 52,068 - HMPREF1058_RS00560 0.11 -2.0 52,251 - HMPREF1058_RS00560 0.19 -2.4 52,780 + HMPREF1058_RS00560 0.42 -2.4 52,878 + HMPREF1058_RS00560 0.47 -1.0 53,036 + HMPREF1058_RS00560 0.53 -2.6 53,150 - HMPREF1058_RS00560 0.58 -2.6 53,993 + -2.8 53,993 + -1.6 53,994 - -3.0 54,594 + +0.5 54,596 + +1.0 54,755 + +0.9 54,755 + -1.3 54,756 - +1.2 54,764 - +1.8 54,769 + +0.2 54,797 + +0.9 54,798 - -0.8 54,798 - -2.2 54,804 - +1.0 54,806 + -2.0 54,814 - +0.3 54,855 + -0.2 54,856 - +0.6 54,859 + -0.5 54,859 + +0.2 54,997 - +0.1 55,029 - -0.7 55,030 + +0.6
Or see this region's nucleotide sequence