Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15410 and HMPREF1058_RS15405 are separated by 41 nucleotides HMPREF1058_RS15405 and HMPREF1058_RS15400 are separated by 152 nucleotides HMPREF1058_RS15400 and HMPREF1058_RS15395 overlap by 4 nucleotides
HMPREF1058_RS15410: HMPREF1058_RS15410 - DUF4136 domain-containing protein, at 929,483 to 930,121
_RS15410
HMPREF1058_RS15405: HMPREF1058_RS15405 - outer membrane beta-barrel protein, at 930,163 to 930,789
_RS15405
HMPREF1058_RS15400: HMPREF1058_RS15400 - polyprenol monophosphomannose synthase, at 930,942 to 931,691
_RS15400
HMPREF1058_RS15395: HMPREF1058_RS15395 - dihydroorotase, at 931,688 to 933,028
_RS15395
Position (kb) 930
931
932 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 930.020 kb on + strand, within HMPREF1058_RS15410 at 930.060 kb on + strand at 930.068 kb on - strand at 930.073 kb on + strand at 930.076 kb on - strand at 930.125 kb on + strand at 930.147 kb on - strand at 930.259 kb on - strand, within HMPREF1058_RS15405 at 930.262 kb on + strand, within HMPREF1058_RS15405 at 930.272 kb on + strand, within HMPREF1058_RS15405 at 930.353 kb on - strand, within HMPREF1058_RS15405 at 930.356 kb on - strand, within HMPREF1058_RS15405 at 930.356 kb on - strand, within HMPREF1058_RS15405 at 930.359 kb on + strand, within HMPREF1058_RS15405 at 930.394 kb on + strand, within HMPREF1058_RS15405 at 930.480 kb on - strand, within HMPREF1058_RS15405 at 930.512 kb on - strand, within HMPREF1058_RS15405 at 930.541 kb on + strand, within HMPREF1058_RS15405 at 930.541 kb on + strand, within HMPREF1058_RS15405 at 930.542 kb on - strand, within HMPREF1058_RS15405 at 930.542 kb on - strand, within HMPREF1058_RS15405 at 930.569 kb on - strand, within HMPREF1058_RS15405 at 930.569 kb on - strand, within HMPREF1058_RS15405 at 930.599 kb on - strand, within HMPREF1058_RS15405 at 930.628 kb on + strand, within HMPREF1058_RS15405 at 930.629 kb on - strand, within HMPREF1058_RS15405 at 930.629 kb on - strand, within HMPREF1058_RS15405 at 930.655 kb on - strand, within HMPREF1058_RS15405 at 930.655 kb on - strand, within HMPREF1058_RS15405 at 930.659 kb on - strand, within HMPREF1058_RS15405 at 930.706 kb on + strand, within HMPREF1058_RS15405 at 930.728 kb on + strand at 930.732 kb on + strand at 930.733 kb on - strand at 930.733 kb on - strand at 930.737 kb on - strand at 930.802 kb on + strand at 930.895 kb on + strand at 930.910 kb on + strand at 930.927 kb on + strand at 931.669 kb on - strand at 931.696 kb on + strand at 931.875 kb on + strand, within HMPREF1058_RS15395 at 931.875 kb on + strand, within HMPREF1058_RS15395 at 931.915 kb on - strand, within HMPREF1058_RS15395 at 931.990 kb on + strand, within HMPREF1058_RS15395 at 932.092 kb on - strand, within HMPREF1058_RS15395
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 remove 930,020 + HMPREF1058_RS15410 0.84 -0.2 930,060 + -0.9 930,068 - -0.4 930,073 + +0.4 930,076 - -1.7 930,125 + -0.4 930,147 - -0.5 930,259 - HMPREF1058_RS15405 0.15 -2.5 930,262 + HMPREF1058_RS15405 0.16 +0.2 930,272 + HMPREF1058_RS15405 0.17 -2.6 930,353 - HMPREF1058_RS15405 0.30 -1.5 930,356 - HMPREF1058_RS15405 0.31 -1.9 930,356 - HMPREF1058_RS15405 0.31 -2.7 930,359 + HMPREF1058_RS15405 0.31 -1.9 930,394 + HMPREF1058_RS15405 0.37 -2.8 930,480 - HMPREF1058_RS15405 0.51 -3.0 930,512 - HMPREF1058_RS15405 0.56 -0.9 930,541 + HMPREF1058_RS15405 0.60 -1.1 930,541 + HMPREF1058_RS15405 0.60 -0.4 930,542 - HMPREF1058_RS15405 0.60 -1.0 930,542 - HMPREF1058_RS15405 0.60 -3.9 930,569 - HMPREF1058_RS15405 0.65 -4.0 930,569 - HMPREF1058_RS15405 0.65 -1.4 930,599 - HMPREF1058_RS15405 0.70 -1.7 930,628 + HMPREF1058_RS15405 0.74 -0.7 930,629 - HMPREF1058_RS15405 0.74 -1.4 930,629 - HMPREF1058_RS15405 0.74 -2.7 930,655 - HMPREF1058_RS15405 0.78 +0.3 930,655 - HMPREF1058_RS15405 0.78 -1.5 930,659 - HMPREF1058_RS15405 0.79 -2.8 930,706 + HMPREF1058_RS15405 0.87 -1.6 930,728 + -0.8 930,732 + -0.5 930,733 - -2.7 930,733 - -1.7 930,737 - -2.0 930,802 + +1.0 930,895 + +0.3 930,910 + +0.6 930,927 + +1.2 931,669 - -1.7 931,696 + -2.0 931,875 + HMPREF1058_RS15395 0.14 -1.7 931,875 + HMPREF1058_RS15395 0.14 -2.3 931,915 - HMPREF1058_RS15395 0.17 -2.3 931,990 + HMPREF1058_RS15395 0.23 -2.0 932,092 - HMPREF1058_RS15395 0.30 -1.7
Or see this region's nucleotide sequence