Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11580

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11585 and HMPREF1058_RS11580 are separated by 44 nucleotidesHMPREF1058_RS11580 and HMPREF1058_RS11575 are separated by 812 nucleotides HMPREF1058_RS11585: HMPREF1058_RS11585 - hypothetical protein, at 342,837 to 345,860 _RS11585 HMPREF1058_RS11580: HMPREF1058_RS11580 - helix-turn-helix transcriptional regulator, at 345,905 to 346,399 _RS11580 HMPREF1058_RS11575: HMPREF1058_RS11575 - site-specific integrase, at 347,212 to 348,150 _RS11575 Position (kb) 345 346 347Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 344.977 kb on - strand, within HMPREF1058_RS11585at 344.988 kb on - strand, within HMPREF1058_RS11585at 345.017 kb on + strand, within HMPREF1058_RS11585at 345.056 kb on + strand, within HMPREF1058_RS11585at 345.083 kb on + strand, within HMPREF1058_RS11585at 345.127 kb on - strand, within HMPREF1058_RS11585at 345.161 kb on + strand, within HMPREF1058_RS11585at 345.174 kb on + strand, within HMPREF1058_RS11585at 345.175 kb on - strand, within HMPREF1058_RS11585at 345.214 kb on - strand, within HMPREF1058_RS11585at 345.281 kb on - strand, within HMPREF1058_RS11585at 345.281 kb on - strand, within HMPREF1058_RS11585at 345.301 kb on - strand, within HMPREF1058_RS11585at 345.361 kb on + strand, within HMPREF1058_RS11585at 345.429 kb on + strand, within HMPREF1058_RS11585at 345.457 kb on + strand, within HMPREF1058_RS11585at 345.556 kb on - strand, within HMPREF1058_RS11585at 345.564 kb on + strandat 345.565 kb on - strandat 345.577 kb on - strandat 345.676 kb on + strandat 345.677 kb on - strandat 345.677 kb on - strandat 345.677 kb on - strandat 345.695 kb on - strandat 345.778 kb on + strandat 345.786 kb on - strandat 345.792 kb on + strandat 345.793 kb on - strandat 345.908 kb on + strandat 345.981 kb on - strand, within HMPREF1058_RS11580at 346.046 kb on + strand, within HMPREF1058_RS11580at 346.099 kb on + strand, within HMPREF1058_RS11580at 346.100 kb on - strand, within HMPREF1058_RS11580at 346.173 kb on - strand, within HMPREF1058_RS11580at 346.227 kb on - strand, within HMPREF1058_RS11580at 346.239 kb on + strand, within HMPREF1058_RS11580at 346.240 kb on - strand, within HMPREF1058_RS11580at 346.246 kb on + strand, within HMPREF1058_RS11580at 346.247 kb on - strand, within HMPREF1058_RS11580at 346.247 kb on - strand, within HMPREF1058_RS11580at 346.252 kb on + strand, within HMPREF1058_RS11580at 346.253 kb on - strand, within HMPREF1058_RS11580at 346.253 kb on - strand, within HMPREF1058_RS11580at 346.255 kb on - strand, within HMPREF1058_RS11580at 346.388 kb on + strandat 346.388 kb on + strandat 346.410 kb on - strandat 346.445 kb on - strandat 346.452 kb on + strandat 346.452 kb on + strandat 346.471 kb on + strandat 346.471 kb on + strandat 346.573 kb on + strandat 346.574 kb on - strandat 346.602 kb on + strandat 346.685 kb on - strandat 346.686 kb on + strandat 346.687 kb on - strandat 346.688 kb on + strandat 346.817 kb on + strandat 346.818 kb on - strandat 346.818 kb on - strandat 346.824 kb on + strandat 346.850 kb on - strandat 346.863 kb on + strandat 346.968 kb on + strandat 346.969 kb on - strandat 346.984 kb on + strandat 346.988 kb on - strandat 346.988 kb on - strandat 346.989 kb on + strandat 346.989 kb on + strandat 347.012 kb on - strandat 347.056 kb on - strandat 347.113 kb on + strandat 347.158 kb on - strandat 347.196 kb on + strandat 347.208 kb on - strandat 347.210 kb on + strandat 347.239 kb on - strandat 347.248 kb on + strandat 347.251 kb on + strandat 347.279 kb on + strandat 347.340 kb on + strand, within HMPREF1058_RS11575at 347.341 kb on - strand, within HMPREF1058_RS11575at 347.384 kb on + strand, within HMPREF1058_RS11575at 347.384 kb on + strand, within HMPREF1058_RS11575at 347.385 kb on - strand, within HMPREF1058_RS11575at 347.388 kb on + strand, within HMPREF1058_RS11575

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4
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344,977 - HMPREF1058_RS11585 0.71 -0.1
344,988 - HMPREF1058_RS11585 0.71 +1.5
345,017 + HMPREF1058_RS11585 0.72 +1.4
345,056 + HMPREF1058_RS11585 0.73 +0.2
345,083 + HMPREF1058_RS11585 0.74 -0.6
345,127 - HMPREF1058_RS11585 0.76 +0.8
345,161 + HMPREF1058_RS11585 0.77 +1.3
345,174 + HMPREF1058_RS11585 0.77 -0.4
345,175 - HMPREF1058_RS11585 0.77 +1.0
345,214 - HMPREF1058_RS11585 0.79 +1.6
345,281 - HMPREF1058_RS11585 0.81 +0.8
345,281 - HMPREF1058_RS11585 0.81 -0.9
345,301 - HMPREF1058_RS11585 0.81 +0.3
345,361 + HMPREF1058_RS11585 0.83 +0.1
345,429 + HMPREF1058_RS11585 0.86 +3.7
345,457 + HMPREF1058_RS11585 0.87 +1.1
345,556 - HMPREF1058_RS11585 0.90 +0.6
345,564 + +0.6
345,565 - +1.6
345,577 - +0.4
345,676 + -0.1
345,677 - +1.3
345,677 - -3.8
345,677 - +0.7
345,695 - +0.2
345,778 + +1.0
345,786 - +1.0
345,792 + +0.9
345,793 - -0.7
345,908 + -0.1
345,981 - HMPREF1058_RS11580 0.15 -1.9
346,046 + HMPREF1058_RS11580 0.28 -1.2
346,099 + HMPREF1058_RS11580 0.39 -0.7
346,100 - HMPREF1058_RS11580 0.39 -1.0
346,173 - HMPREF1058_RS11580 0.54 -0.3
346,227 - HMPREF1058_RS11580 0.65 -1.4
346,239 + HMPREF1058_RS11580 0.67 -0.4
346,240 - HMPREF1058_RS11580 0.68 -1.0
346,246 + HMPREF1058_RS11580 0.69 -1.7
346,247 - HMPREF1058_RS11580 0.69 -2.4
346,247 - HMPREF1058_RS11580 0.69 -1.6
346,252 + HMPREF1058_RS11580 0.70 +0.1
346,253 - HMPREF1058_RS11580 0.70 -1.9
346,253 - HMPREF1058_RS11580 0.70 -4.4
346,255 - HMPREF1058_RS11580 0.71 -1.7
346,388 + -0.3
346,388 + +0.5
346,410 - -1.0
346,445 - +0.9
346,452 + +0.1
346,452 + +0.1
346,471 + +0.1
346,471 + +0.4
346,573 + -0.1
346,574 - +3.3
346,602 + -0.4
346,685 - +1.3
346,686 + +0.2
346,687 - +1.2
346,688 + -1.1
346,817 + -0.5
346,818 - +1.7
346,818 - +1.4
346,824 + +0.4
346,850 - +2.2
346,863 + -0.1
346,968 + -1.7
346,969 - +2.2
346,984 + -1.2
346,988 - +0.9
346,988 - +1.1
346,989 + +0.9
346,989 + +0.9
347,012 - -0.7
347,056 - +0.5
347,113 + +0.6
347,158 - +1.7
347,196 + +0.5
347,208 - +0.5
347,210 + -0.8
347,239 - +0.8
347,248 + +0.2
347,251 + -0.4
347,279 + +0.3
347,340 + HMPREF1058_RS11575 0.14 -2.4
347,341 - HMPREF1058_RS11575 0.14 +0.6
347,384 + HMPREF1058_RS11575 0.18 +0.6
347,384 + HMPREF1058_RS11575 0.18 +0.3
347,385 - HMPREF1058_RS11575 0.18 +0.1
347,388 + HMPREF1058_RS11575 0.19 -0.7

Or see this region's nucleotide sequence