Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08040 and HMPREF1058_RS08035 are separated by 88 nucleotides HMPREF1058_RS08035 and HMPREF1058_RS08030 are separated by 36 nucleotides HMPREF1058_RS08030 and HMPREF1058_RS08025 are separated by 242 nucleotides
HMPREF1058_RS08040: HMPREF1058_RS08040 - HD domain-containing protein, at 67,881 to 69,116
_RS08040
HMPREF1058_RS08035: HMPREF1058_RS08035 - orotidine-5'-phosphate decarboxylase, at 69,205 to 70,023
_RS08035
HMPREF1058_RS08030: HMPREF1058_RS08030 - peptide chain release factor 1, at 70,060 to 71,175
_RS08030
HMPREF1058_RS08025: HMPREF1058_RS08025 - phosphoribosylformylglycinamidine cyclo-ligase, at 71,418 to 72,587
_RS08025
Position (kb) 70
71
72 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 69.124 kb on - strand at 69.158 kb on + strand at 69.170 kb on + strand at 69.193 kb on + strand at 71.252 kb on - strand at 71.259 kb on - strand at 71.330 kb on - strand at 71.334 kb on - strand at 71.343 kb on - strand at 71.405 kb on - strand at 71.558 kb on - strand, within HMPREF1058_RS08025 at 71.583 kb on - strand, within HMPREF1058_RS08025 at 71.583 kb on - strand, within HMPREF1058_RS08025 at 71.587 kb on - strand, within HMPREF1058_RS08025 at 71.881 kb on - strand, within HMPREF1058_RS08025 at 71.906 kb on - strand, within HMPREF1058_RS08025 at 72.005 kb on - strand, within HMPREF1058_RS08025 at 72.009 kb on - strand, within HMPREF1058_RS08025 at 72.034 kb on - strand, within HMPREF1058_RS08025 at 72.034 kb on - strand, within HMPREF1058_RS08025 at 72.112 kb on - strand, within HMPREF1058_RS08025 at 72.112 kb on - strand, within HMPREF1058_RS08025
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day4 remove 69,124 - -0.9 69,158 + -0.9 69,170 + -1.5 69,193 + -2.4 71,252 - +5.2 71,259 - +4.1 71,330 - +6.3 71,334 - +4.0 71,343 - +3.8 71,405 - +4.2 71,558 - HMPREF1058_RS08025 0.12 -4.0 71,583 - HMPREF1058_RS08025 0.14 -2.8 71,583 - HMPREF1058_RS08025 0.14 -3.5 71,587 - HMPREF1058_RS08025 0.14 -3.6 71,881 - HMPREF1058_RS08025 0.40 -4.8 71,906 - HMPREF1058_RS08025 0.42 -5.8 72,005 - HMPREF1058_RS08025 0.50 -5.1 72,009 - HMPREF1058_RS08025 0.51 -3.9 72,034 - HMPREF1058_RS08025 0.53 -4.4 72,034 - HMPREF1058_RS08025 0.53 -5.0 72,112 - HMPREF1058_RS08025 0.59 -3.3 72,112 - HMPREF1058_RS08025 0.59 -4.3
Or see this region's nucleotide sequence