Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15975 and HMPREF1058_RS15970 are separated by 67 nucleotides HMPREF1058_RS15970 and HMPREF1058_RS15965 are separated by 12 nucleotides HMPREF1058_RS15965 and HMPREF1058_RS15960 are separated by 74 nucleotides HMPREF1058_RS15960 and HMPREF1058_RS15955 are separated by 205 nucleotides
HMPREF1058_RS15975: HMPREF1058_RS15975 - saccharopine dehydrogenase family protein, at 793,011 to 794,204
_RS15975
HMPREF1058_RS15970: HMPREF1058_RS15970 - thioredoxin-dependent thiol peroxidase, at 794,272 to 794,718
_RS15970
HMPREF1058_RS15965: HMPREF1058_RS15965 - recombinase RecA, at 794,731 to 795,774
_RS15965
HMPREF1058_RS15960: HMPREF1058_RS15960 - DUF4923 family protein, at 795,849 to 796,445
_RS15960
HMPREF1058_RS15955: HMPREF1058_RS15955 - RagB/SusD family nutrient uptake outer membrane protein, at 796,651 to 798,366
_RS15955
Position (kb) 794
795
796 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 793.922 kb on + strand, within HMPREF1058_RS15975 at 793.964 kb on + strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.972 kb on - strand, within HMPREF1058_RS15975 at 793.978 kb on - strand, within HMPREF1058_RS15975 at 794.030 kb on - strand, within HMPREF1058_RS15975 at 794.034 kb on + strand, within HMPREF1058_RS15975 at 794.036 kb on + strand, within HMPREF1058_RS15975 at 794.037 kb on - strand, within HMPREF1058_RS15975 at 794.113 kb on + strand at 794.179 kb on + strand at 794.224 kb on + strand at 794.224 kb on + strand at 794.280 kb on - strand at 794.360 kb on + strand, within HMPREF1058_RS15970 at 794.363 kb on + strand, within HMPREF1058_RS15970 at 794.363 kb on + strand, within HMPREF1058_RS15970 at 794.427 kb on + strand, within HMPREF1058_RS15970 at 794.522 kb on + strand, within HMPREF1058_RS15970 at 794.596 kb on + strand, within HMPREF1058_RS15970 at 794.608 kb on + strand, within HMPREF1058_RS15970 at 794.608 kb on + strand, within HMPREF1058_RS15970 at 794.609 kb on - strand, within HMPREF1058_RS15970 at 794.626 kb on - strand, within HMPREF1058_RS15970 at 794.664 kb on + strand, within HMPREF1058_RS15970 at 794.664 kb on + strand, within HMPREF1058_RS15970 at 794.665 kb on - strand, within HMPREF1058_RS15970 at 794.964 kb on - strand, within HMPREF1058_RS15965 at 795.119 kb on + strand, within HMPREF1058_RS15965 at 795.252 kb on + strand, within HMPREF1058_RS15965 at 795.312 kb on + strand, within HMPREF1058_RS15965 at 795.312 kb on + strand, within HMPREF1058_RS15965 at 795.345 kb on + strand, within HMPREF1058_RS15965 at 795.609 kb on - strand, within HMPREF1058_RS15965 at 795.620 kb on + strand, within HMPREF1058_RS15965 at 795.650 kb on - strand, within HMPREF1058_RS15965 at 795.822 kb on + strand at 795.825 kb on + strand at 795.839 kb on + strand at 795.844 kb on + strand at 795.886 kb on + strand at 795.902 kb on + strand at 795.903 kb on - strand at 796.035 kb on + strand, within HMPREF1058_RS15960 at 796.055 kb on + strand, within HMPREF1058_RS15960 at 796.087 kb on + strand, within HMPREF1058_RS15960 at 796.088 kb on - strand, within HMPREF1058_RS15960 at 796.120 kb on + strand, within HMPREF1058_RS15960 at 796.121 kb on - strand, within HMPREF1058_RS15960 at 796.148 kb on + strand, within HMPREF1058_RS15960 at 796.149 kb on - strand, within HMPREF1058_RS15960 at 796.276 kb on - strand, within HMPREF1058_RS15960 at 796.276 kb on - strand, within HMPREF1058_RS15960 at 796.279 kb on + strand, within HMPREF1058_RS15960 at 796.289 kb on + strand, within HMPREF1058_RS15960 at 796.294 kb on - strand, within HMPREF1058_RS15960 at 796.294 kb on - strand, within HMPREF1058_RS15960 at 796.298 kb on + strand, within HMPREF1058_RS15960 at 796.356 kb on - strand, within HMPREF1058_RS15960 at 796.412 kb on + strand at 796.451 kb on - strand at 796.505 kb on - strand at 796.505 kb on - strand at 796.526 kb on + strand at 796.599 kb on + strand at 796.599 kb on + strand at 796.600 kb on - strand at 796.603 kb on + strand at 796.648 kb on - strand at 796.650 kb on - strand at 796.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 793,922 + HMPREF1058_RS15975 0.76 -1.3 793,964 + HMPREF1058_RS15975 0.80 -1.9 793,969 - HMPREF1058_RS15975 0.80 -0.5 793,969 - HMPREF1058_RS15975 0.80 -2.1 793,969 - HMPREF1058_RS15975 0.80 -2.4 793,969 - HMPREF1058_RS15975 0.80 -2.4 793,972 - HMPREF1058_RS15975 0.80 -2.7 793,978 - HMPREF1058_RS15975 0.81 -2.1 794,030 - HMPREF1058_RS15975 0.85 -3.3 794,034 + HMPREF1058_RS15975 0.86 -0.4 794,036 + HMPREF1058_RS15975 0.86 -0.3 794,037 - HMPREF1058_RS15975 0.86 -1.7 794,113 + -0.7 794,179 + +0.9 794,224 + -0.4 794,224 + -0.2 794,280 - -2.3 794,360 + HMPREF1058_RS15970 0.20 -0.1 794,363 + HMPREF1058_RS15970 0.20 -0.1 794,363 + HMPREF1058_RS15970 0.20 -0.4 794,427 + HMPREF1058_RS15970 0.35 +0.3 794,522 + HMPREF1058_RS15970 0.56 -1.2 794,596 + HMPREF1058_RS15970 0.72 +0.6 794,608 + HMPREF1058_RS15970 0.75 -1.0 794,608 + HMPREF1058_RS15970 0.75 -1.6 794,609 - HMPREF1058_RS15970 0.75 -2.1 794,626 - HMPREF1058_RS15970 0.79 -2.9 794,664 + HMPREF1058_RS15970 0.88 -0.1 794,664 + HMPREF1058_RS15970 0.88 -0.6 794,665 - HMPREF1058_RS15970 0.88 -2.7 794,964 - HMPREF1058_RS15965 0.22 -3.8 795,119 + HMPREF1058_RS15965 0.37 -2.1 795,252 + HMPREF1058_RS15965 0.50 -1.1 795,312 + HMPREF1058_RS15965 0.56 -2.5 795,312 + HMPREF1058_RS15965 0.56 -2.3 795,345 + HMPREF1058_RS15965 0.59 -2.1 795,609 - HMPREF1058_RS15965 0.84 -2.1 795,620 + HMPREF1058_RS15965 0.85 -3.0 795,650 - HMPREF1058_RS15965 0.88 -2.5 795,822 + -1.0 795,825 + -1.3 795,839 + +0.8 795,844 + +0.2 795,886 + -0.9 795,902 + -1.0 795,903 - +1.1 796,035 + HMPREF1058_RS15960 0.31 -0.9 796,055 + HMPREF1058_RS15960 0.35 -0.0 796,087 + HMPREF1058_RS15960 0.40 -0.3 796,088 - HMPREF1058_RS15960 0.40 +0.2 796,120 + HMPREF1058_RS15960 0.45 +0.2 796,121 - HMPREF1058_RS15960 0.46 -0.2 796,148 + HMPREF1058_RS15960 0.50 +0.2 796,149 - HMPREF1058_RS15960 0.50 +0.3 796,276 - HMPREF1058_RS15960 0.72 +0.2 796,276 - HMPREF1058_RS15960 0.72 +0.5 796,279 + HMPREF1058_RS15960 0.72 +0.5 796,289 + HMPREF1058_RS15960 0.74 +0.5 796,294 - HMPREF1058_RS15960 0.75 -0.1 796,294 - HMPREF1058_RS15960 0.75 +0.3 796,298 + HMPREF1058_RS15960 0.75 +0.1 796,356 - HMPREF1058_RS15960 0.85 -1.3 796,412 + +0.7 796,451 - -1.0 796,505 - +0.9 796,505 - +0.8 796,526 + -0.6 796,599 + +0.5 796,599 + -0.1 796,600 - +0.2 796,603 + -1.2 796,648 - -1.0 796,650 - +0.5 796,699 - +0.3
Or see this region's nucleotide sequence