Experiment: MoYLS4 with Nitrate 50mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nifA-2 and DVUA0144 are separated by 214 nucleotides DVUA0144 and DORF2315 are separated by 499 nucleotides DORF2315 and DVUA0145 are separated by 25 nucleotides
DVUA0143: nifA-2 - nif-specific regulatory protein (TIGR), at 184,786 to 186,333
nifA-2
DVUA0144: DVUA0144 - hypothetical protein (TIGR), at 186,548 to 186,691
DVUA0144
DORF2315: DORF2315 - no description, at 187,191 to 187,322
DORF2315
DVUA0145: DVUA0145 - conserved domain protein (TIGR), at 187,348 to 191,274
DVUA0145
Position (kb) 186
187 Strain fitness (log2 ratio) -1
0
1
2 at 185.587 kb on - strand, within nifA-2 at 185.638 kb on - strand, within nifA-2 at 185.665 kb on + strand, within nifA-2 at 185.673 kb on - strand, within nifA-2 at 185.700 kb on + strand, within nifA-2 at 185.837 kb on + strand, within nifA-2 at 185.906 kb on + strand, within nifA-2 at 186.033 kb on - strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.053 kb on + strand, within nifA-2 at 186.061 kb on - strand, within nifA-2 at 186.068 kb on + strand, within nifA-2 at 186.068 kb on + strand, within nifA-2 at 186.314 kb on - strand at 186.370 kb on - strand at 186.466 kb on + strand at 186.497 kb on + strand at 186.527 kb on + strand at 186.547 kb on - strand at 186.629 kb on + strand, within DVUA0144 at 186.631 kb on + strand, within DVUA0144 at 186.699 kb on + strand at 186.726 kb on - strand at 186.735 kb on + strand at 186.759 kb on + strand at 186.773 kb on - strand at 186.787 kb on + strand at 186.805 kb on - strand at 186.845 kb on + strand at 186.850 kb on + strand at 186.858 kb on - strand at 186.920 kb on + strand at 186.975 kb on + strand at 186.977 kb on - strand at 187.014 kb on + strand at 187.099 kb on - strand at 187.109 kb on - strand at 187.288 kb on - strand, within DORF2315 at 187.294 kb on + strand, within DORF2315 at 187.358 kb on + strand at 187.405 kb on - strand at 187.416 kb on + strand at 187.530 kb on - strand at 187.541 kb on - strand at 187.630 kb on - strand at 187.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrate 50mM remove 185,587 - nifA-2 DVUA0143 0.52 -0.1 185,638 - nifA-2 DVUA0143 0.55 -0.0 185,665 + nifA-2 DVUA0143 0.57 -0.4 185,673 - nifA-2 DVUA0143 0.57 -0.1 185,700 + nifA-2 DVUA0143 0.59 -0.1 185,837 + nifA-2 DVUA0143 0.68 +0.2 185,906 + nifA-2 DVUA0143 0.72 +0.1 186,033 - nifA-2 DVUA0143 0.81 -0.6 186,053 + nifA-2 DVUA0143 0.82 -0.1 186,053 + nifA-2 DVUA0143 0.82 -0.3 186,053 + nifA-2 DVUA0143 0.82 +0.4 186,053 + nifA-2 DVUA0143 0.82 -0.4 186,053 + nifA-2 DVUA0143 0.82 -0.1 186,053 + nifA-2 DVUA0143 0.82 +0.6 186,061 - nifA-2 DVUA0143 0.82 +1.5 186,068 + nifA-2 DVUA0143 0.83 -0.0 186,068 + nifA-2 DVUA0143 0.83 -0.3 186,314 - +0.4 186,370 - -0.4 186,466 + -1.0 186,497 + -0.1 186,527 + +0.0 186,547 - -0.9 186,629 + DVUA0144 0.56 -0.0 186,631 + DVUA0144 0.58 -1.3 186,699 + -0.2 186,726 - -0.5 186,735 + -0.2 186,759 + -0.1 186,773 - -0.1 186,787 + -0.1 186,805 - -1.1 186,845 + -0.8 186,850 + +0.0 186,858 - -0.2 186,920 + -0.9 186,975 + +0.2 186,977 - -0.3 187,014 + -0.4 187,099 - -0.4 187,109 - +1.9 187,288 - DORF2315 0.73 +0.9 187,294 + DORF2315 0.78 -0.1 187,358 + -0.0 187,405 - +0.5 187,416 + +0.6 187,530 - -0.4 187,541 - +0.4 187,630 - +0.4 187,675 - -0.4
Or see this region's nucleotide sequence