Experiment: MoYLS4 with Nitrate 50mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt moaA and DVU0581 are separated by 236 nucleotides DVU0581 and DVU0582 are separated by 35 nucleotides
DVU0580: moaA - molybdenum cofactor biosynthesis protein A (TIGR), at 643,924 to 644,949
moaA
DVU0581: DVU0581 - response regulator/anti-anti-sigma factor (TIGR), at 645,186 to 645,887
DVU0581
DVU0582: DVU0582 - sensory box histidine kinase (TIGR), at 645,923 to 647,941
DVU0582
Position (kb) 645
646 Strain fitness (log2 ratio) -2
-1
0
1
2 at 644.187 kb on - strand, within moaA at 644.190 kb on + strand, within moaA at 644.309 kb on + strand, within moaA at 644.426 kb on - strand, within moaA at 644.449 kb on - strand, within moaA at 644.669 kb on + strand, within moaA at 644.808 kb on - strand, within moaA at 644.810 kb on + strand, within moaA at 644.810 kb on + strand, within moaA at 644.818 kb on - strand, within moaA at 644.850 kb on - strand at 644.925 kb on + strand at 644.925 kb on + strand at 644.999 kb on - strand at 645.009 kb on - strand at 645.072 kb on + strand at 645.077 kb on + strand at 645.093 kb on - strand at 645.110 kb on + strand at 645.191 kb on + strand at 645.191 kb on - strand at 645.196 kb on + strand at 645.261 kb on - strand, within DVU0581 at 645.279 kb on + strand, within DVU0581 at 645.287 kb on - strand, within DVU0581 at 645.307 kb on + strand, within DVU0581 at 645.310 kb on + strand, within DVU0581 at 645.312 kb on + strand, within DVU0581 at 645.320 kb on - strand, within DVU0581 at 645.385 kb on - strand, within DVU0581 at 645.433 kb on + strand, within DVU0581 at 645.433 kb on + strand, within DVU0581 at 645.478 kb on - strand, within DVU0581 at 645.544 kb on + strand, within DVU0581 at 645.612 kb on + strand, within DVU0581 at 645.633 kb on + strand, within DVU0581 at 645.633 kb on + strand, within DVU0581 at 645.642 kb on + strand, within DVU0581 at 645.650 kb on - strand, within DVU0581 at 645.686 kb on + strand, within DVU0581 at 645.686 kb on + strand, within DVU0581 at 645.694 kb on - strand, within DVU0581 at 645.811 kb on + strand, within DVU0581 at 645.843 kb on + strand at 645.903 kb on + strand at 645.911 kb on - strand at 645.933 kb on + strand at 645.953 kb on + strand at 646.046 kb on + strand at 646.046 kb on + strand at 646.071 kb on + strand at 646.077 kb on - strand at 646.280 kb on - strand, within DVU0582 at 646.385 kb on + strand, within DVU0582 at 646.393 kb on - strand, within DVU0582 at 646.393 kb on - strand, within DVU0582 at 646.393 kb on - strand, within DVU0582 at 646.407 kb on + strand, within DVU0582 at 646.452 kb on + strand, within DVU0582 at 646.518 kb on - strand, within DVU0582 at 646.518 kb on - strand, within DVU0582 at 646.547 kb on + strand, within DVU0582 at 646.549 kb on - strand, within DVU0582 at 646.606 kb on + strand, within DVU0582 at 646.614 kb on - strand, within DVU0582 at 646.619 kb on + strand, within DVU0582 at 646.671 kb on + strand, within DVU0582 at 646.691 kb on + strand, within DVU0582 at 646.721 kb on - strand, within DVU0582 at 646.764 kb on - strand, within DVU0582 at 646.813 kb on + strand, within DVU0582
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrate 50mM remove 644,187 - moaA DVU0580 0.26 +2.0 644,190 + moaA DVU0580 0.26 +0.1 644,309 + moaA DVU0580 0.38 -0.1 644,426 - moaA DVU0580 0.49 -0.5 644,449 - moaA DVU0580 0.51 -0.5 644,669 + moaA DVU0580 0.73 -0.4 644,808 - moaA DVU0580 0.86 -0.3 644,810 + moaA DVU0580 0.86 -0.2 644,810 + moaA DVU0580 0.86 -2.0 644,818 - moaA DVU0580 0.87 -0.4 644,850 - -0.6 644,925 + -0.2 644,925 + -0.4 644,999 - -0.5 645,009 - -0.5 645,072 + +0.5 645,077 + -0.2 645,093 - -0.4 645,110 + +1.1 645,191 + -1.7 645,191 - -1.1 645,196 + -0.2 645,261 - DVU0581 0.11 -0.1 645,279 + DVU0581 0.13 -0.3 645,287 - DVU0581 0.14 -1.2 645,307 + DVU0581 0.17 -0.1 645,310 + DVU0581 0.18 -0.3 645,312 + DVU0581 0.18 -0.9 645,320 - DVU0581 0.19 -0.5 645,385 - DVU0581 0.28 -0.4 645,433 + DVU0581 0.35 -1.3 645,433 + DVU0581 0.35 -0.2 645,478 - DVU0581 0.42 -1.0 645,544 + DVU0581 0.51 -0.6 645,612 + DVU0581 0.61 -1.5 645,633 + DVU0581 0.64 +0.5 645,633 + DVU0581 0.64 -0.6 645,642 + DVU0581 0.65 -0.5 645,650 - DVU0581 0.66 -0.4 645,686 + DVU0581 0.71 -1.0 645,686 + DVU0581 0.71 -1.1 645,694 - DVU0581 0.72 -0.7 645,811 + DVU0581 0.89 -1.7 645,843 + -0.2 645,903 + +0.1 645,911 - +0.4 645,933 + -0.5 645,953 + -0.5 646,046 + -0.3 646,046 + -0.2 646,071 + +0.7 646,077 - -0.6 646,280 - DVU0582 0.18 -0.1 646,385 + DVU0582 0.23 -0.9 646,393 - DVU0582 0.23 -0.8 646,393 - DVU0582 0.23 -0.6 646,393 - DVU0582 0.23 -0.6 646,407 + DVU0582 0.24 -0.7 646,452 + DVU0582 0.26 -1.6 646,518 - DVU0582 0.29 +0.1 646,518 - DVU0582 0.29 -0.1 646,547 + DVU0582 0.31 -0.5 646,549 - DVU0582 0.31 +0.9 646,606 + DVU0582 0.34 -0.4 646,614 - DVU0582 0.34 -0.6 646,619 + DVU0582 0.34 -0.9 646,671 + DVU0582 0.37 -1.1 646,691 + DVU0582 0.38 -0.4 646,721 - DVU0582 0.40 +0.6 646,764 - DVU0582 0.42 -0.7 646,813 + DVU0582 0.44 -0.5
Or see this region's nucleotide sequence