Experiment: MoYLS4 with Nitrate 50mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hmcB and hmcA are separated by 18 nucleotides hmcA and DVU0538 are separated by 389 nucleotides
DVU0535: hmcB - 40.1 kd protein in hmc operon (HmcB) (voordouw), at 606,040 to 607,152
hmcB
DVU0536: hmcA - HmcA; high-molecular-weight cytochrome c (voordouw), at 607,171 to 608,853
hmcA
DVU0538: DVU0538 - AP endonuclease, family 2 (TIGR), at 609,243 to 610,031
DVU0538
Position (kb) 607
608
609 Strain fitness (log2 ratio) -2
-1
0
1 at 606.203 kb on + strand, within hmcB at 606.203 kb on + strand, within hmcB at 606.203 kb on + strand, within hmcB at 606.203 kb on + strand, within hmcB at 606.208 kb on - strand, within hmcB at 606.257 kb on + strand, within hmcB at 606.262 kb on + strand, within hmcB at 606.265 kb on - strand, within hmcB at 606.344 kb on + strand, within hmcB at 606.349 kb on + strand, within hmcB at 606.376 kb on + strand, within hmcB at 606.438 kb on - strand, within hmcB at 606.525 kb on + strand, within hmcB at 606.531 kb on - strand, within hmcB at 606.555 kb on + strand, within hmcB at 606.573 kb on + strand, within hmcB at 606.595 kb on + strand, within hmcB at 606.661 kb on + strand, within hmcB at 606.663 kb on - strand, within hmcB at 606.670 kb on - strand, within hmcB at 606.863 kb on + strand, within hmcB at 606.984 kb on + strand, within hmcB at 607.019 kb on - strand, within hmcB at 607.037 kb on - strand, within hmcB at 607.037 kb on - strand, within hmcB at 607.037 kb on - strand, within hmcB at 607.081 kb on - strand at 607.098 kb on + strand at 607.247 kb on + strand at 607.247 kb on + strand at 607.255 kb on - strand at 607.349 kb on - strand, within hmcA at 607.395 kb on - strand, within hmcA at 607.512 kb on + strand, within hmcA at 607.549 kb on + strand, within hmcA at 607.601 kb on + strand, within hmcA at 607.604 kb on - strand, within hmcA at 607.609 kb on - strand, within hmcA at 607.609 kb on - strand, within hmcA at 607.625 kb on + strand, within hmcA at 607.625 kb on + strand, within hmcA at 607.630 kb on + strand, within hmcA at 607.680 kb on + strand, within hmcA at 607.734 kb on + strand, within hmcA at 607.742 kb on - strand, within hmcA at 607.811 kb on + strand, within hmcA at 607.829 kb on - strand, within hmcA at 607.840 kb on + strand, within hmcA at 607.844 kb on - strand, within hmcA at 607.932 kb on + strand, within hmcA at 607.940 kb on - strand, within hmcA at 607.979 kb on + strand, within hmcA at 607.992 kb on - strand, within hmcA at 608.012 kb on - strand, within hmcA at 608.044 kb on - strand, within hmcA at 608.044 kb on - strand, within hmcA at 608.044 kb on - strand, within hmcA at 608.093 kb on + strand, within hmcA at 608.099 kb on + strand, within hmcA at 608.101 kb on - strand, within hmcA at 608.158 kb on - strand, within hmcA at 608.209 kb on - strand, within hmcA at 608.213 kb on + strand, within hmcA at 608.221 kb on - strand, within hmcA at 608.546 kb on + strand, within hmcA at 608.554 kb on - strand, within hmcA at 608.572 kb on + strand, within hmcA at 608.575 kb on - strand, within hmcA at 608.580 kb on - strand, within hmcA at 608.580 kb on - strand, within hmcA at 608.580 kb on - strand, within hmcA at 608.707 kb on - strand at 608.710 kb on + strand at 608.710 kb on + strand at 608.757 kb on - strand at 608.780 kb on - strand at 608.788 kb on - strand at 608.790 kb on - strand at 608.798 kb on + strand at 608.839 kb on - strand at 608.849 kb on + strand at 608.849 kb on - strand at 608.944 kb on - strand at 608.946 kb on - strand at 609.001 kb on + strand at 609.136 kb on + strand at 609.175 kb on + strand at 609.175 kb on + strand at 609.207 kb on + strand at 609.215 kb on - strand at 609.297 kb on - strand at 609.348 kb on + strand, within DVU0538 at 609.348 kb on + strand, within DVU0538 at 609.356 kb on - strand, within DVU0538 at 609.410 kb on + strand, within DVU0538 at 609.410 kb on + strand, within DVU0538 at 609.423 kb on + strand, within DVU0538 at 609.541 kb on - strand, within DVU0538 at 609.582 kb on - strand, within DVU0538 at 609.600 kb on - strand, within DVU0538 at 609.600 kb on - strand, within DVU0538 at 609.622 kb on + strand, within DVU0538 at 609.632 kb on - strand, within DVU0538 at 609.655 kb on - strand, within DVU0538 at 609.697 kb on - strand, within DVU0538 at 609.733 kb on + strand, within DVU0538 at 609.757 kb on + strand, within DVU0538 at 609.798 kb on + strand, within DVU0538 at 609.824 kb on - strand, within DVU0538 at 609.824 kb on - strand, within DVU0538
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrate 50mM remove 606,203 + hmcB DVU0535 0.15 -0.3 606,203 + hmcB DVU0535 0.15 -0.7 606,203 + hmcB DVU0535 0.15 -0.4 606,203 + hmcB DVU0535 0.15 +1.3 606,208 - hmcB DVU0535 0.15 -1.1 606,257 + hmcB DVU0535 0.19 +0.2 606,262 + hmcB DVU0535 0.20 -0.6 606,265 - hmcB DVU0535 0.20 -0.4 606,344 + hmcB DVU0535 0.27 -0.6 606,349 + hmcB DVU0535 0.28 -0.9 606,376 + hmcB DVU0535 0.30 -0.4 606,438 - hmcB DVU0535 0.36 +0.2 606,525 + hmcB DVU0535 0.44 -0.9 606,531 - hmcB DVU0535 0.44 -0.1 606,555 + hmcB DVU0535 0.46 -0.6 606,573 + hmcB DVU0535 0.48 +0.2 606,595 + hmcB DVU0535 0.50 -1.3 606,661 + hmcB DVU0535 0.56 -0.3 606,663 - hmcB DVU0535 0.56 -0.4 606,670 - hmcB DVU0535 0.57 -0.7 606,863 + hmcB DVU0535 0.74 -0.2 606,984 + hmcB DVU0535 0.85 -0.6 607,019 - hmcB DVU0535 0.88 -1.4 607,037 - hmcB DVU0535 0.90 -1.5 607,037 - hmcB DVU0535 0.90 -0.8 607,037 - hmcB DVU0535 0.90 -0.0 607,081 - -0.6 607,098 + -0.5 607,247 + -1.0 607,247 + -0.3 607,255 - -0.1 607,349 - hmcA DVU0536 0.11 +0.2 607,395 - hmcA DVU0536 0.13 -0.8 607,512 + hmcA DVU0536 0.20 -0.3 607,549 + hmcA DVU0536 0.22 -0.3 607,601 + hmcA DVU0536 0.26 -1.1 607,604 - hmcA DVU0536 0.26 -1.0 607,609 - hmcA DVU0536 0.26 +0.7 607,609 - hmcA DVU0536 0.26 -2.2 607,625 + hmcA DVU0536 0.27 -1.9 607,625 + hmcA DVU0536 0.27 +0.1 607,630 + hmcA DVU0536 0.27 -1.2 607,680 + hmcA DVU0536 0.30 -0.2 607,734 + hmcA DVU0536 0.33 +0.0 607,742 - hmcA DVU0536 0.34 -0.6 607,811 + hmcA DVU0536 0.38 +0.1 607,829 - hmcA DVU0536 0.39 -0.6 607,840 + hmcA DVU0536 0.40 -0.5 607,844 - hmcA DVU0536 0.40 -0.6 607,932 + hmcA DVU0536 0.45 -1.0 607,940 - hmcA DVU0536 0.46 -0.7 607,979 + hmcA DVU0536 0.48 -0.2 607,992 - hmcA DVU0536 0.49 -0.9 608,012 - hmcA DVU0536 0.50 -0.1 608,044 - hmcA DVU0536 0.52 +1.5 608,044 - hmcA DVU0536 0.52 -0.5 608,044 - hmcA DVU0536 0.52 -0.9 608,093 + hmcA DVU0536 0.55 -0.9 608,099 + hmcA DVU0536 0.55 -0.5 608,101 - hmcA DVU0536 0.55 -0.4 608,158 - hmcA DVU0536 0.59 -1.8 608,209 - hmcA DVU0536 0.62 -1.2 608,213 + hmcA DVU0536 0.62 -0.3 608,221 - hmcA DVU0536 0.62 -2.0 608,546 + hmcA DVU0536 0.82 -2.2 608,554 - hmcA DVU0536 0.82 -1.0 608,572 + hmcA DVU0536 0.83 -0.1 608,575 - hmcA DVU0536 0.83 -1.6 608,580 - hmcA DVU0536 0.84 -0.1 608,580 - hmcA DVU0536 0.84 +1.3 608,580 - hmcA DVU0536 0.84 -0.8 608,707 - -0.9 608,710 + -1.2 608,710 + -0.6 608,757 - -1.3 608,780 - -0.1 608,788 - -0.9 608,790 - -1.1 608,798 + -1.0 608,839 - +0.2 608,849 + -0.3 608,849 - +1.0 608,944 - -1.5 608,946 - -0.3 609,001 + -1.3 609,136 + -0.7 609,175 + +0.1 609,175 + +0.9 609,207 + -0.1 609,215 - +1.2 609,297 - -0.7 609,348 + DVU0538 0.13 -0.5 609,348 + DVU0538 0.13 -0.3 609,356 - DVU0538 0.14 -0.3 609,410 + DVU0538 0.21 -0.6 609,410 + DVU0538 0.21 -0.8 609,423 + DVU0538 0.23 -0.3 609,541 - DVU0538 0.38 -0.3 609,582 - DVU0538 0.43 -0.2 609,600 - DVU0538 0.45 -0.1 609,600 - DVU0538 0.45 -0.6 609,622 + DVU0538 0.48 -0.3 609,632 - DVU0538 0.49 -0.3 609,655 - DVU0538 0.52 -0.3 609,697 - DVU0538 0.58 -0.2 609,733 + DVU0538 0.62 -0.8 609,757 + DVU0538 0.65 +0.3 609,798 + DVU0538 0.70 -0.3 609,824 - DVU0538 0.74 +1.0 609,824 - DVU0538 0.74 -0.9
Or see this region's nucleotide sequence