Experiment: MoYLS4 with Nitrate 50mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atoC and DVU1420 are separated by 60 nucleotides DVU1420 and DVU1421 are separated by 199 nucleotides DVU1421 and DVU1422 are separated by 64 nucleotides
DVU1419: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 1,492,844 to 1,494,223
atoC
DVU1420: DVU1420 - Hpt domain protein (TIGR), at 1,494,284 to 1,494,655
DVU1420
DVU1421: DVU1421 - hypothetical protein (TIGR), at 1,494,855 to 1,495,316
DVU1421
DVU1422: DVU1422 - OmpA family protein (TIGR), at 1,495,381 to 1,496,454
DVU1422
Position (kb)
1494
1495 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1493.293 kb on - strand, within atoC at 1493.366 kb on + strand, within atoC at 1493.366 kb on + strand, within atoC at 1493.636 kb on + strand, within atoC at 1493.733 kb on - strand, within atoC at 1493.964 kb on + strand, within atoC at 1493.994 kb on - strand, within atoC at 1494.114 kb on + strand at 1494.155 kb on + strand at 1494.236 kb on + strand at 1494.236 kb on + strand at 1494.272 kb on + strand at 1494.279 kb on + strand at 1494.360 kb on - strand, within DVU1420 at 1494.693 kb on - strand at 1494.732 kb on - strand at 1494.732 kb on - strand at 1494.732 kb on - strand at 1494.736 kb on + strand at 1494.927 kb on + strand, within DVU1421 at 1495.123 kb on - strand, within DVU1421 at 1495.154 kb on - strand, within DVU1421 at 1495.159 kb on - strand, within DVU1421 at 1495.371 kb on + strand at 1495.521 kb on - strand, within DVU1422
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrate 50mM remove 1,493,293 - atoC DVU1419 0.33 +0.1 1,493,366 + atoC DVU1419 0.38 -2.8 1,493,366 + atoC DVU1419 0.38 -1.5 1,493,636 + atoC DVU1419 0.57 -1.7 1,493,733 - atoC DVU1419 0.64 -1.4 1,493,964 + atoC DVU1419 0.81 -0.0 1,493,994 - atoC DVU1419 0.83 -2.1 1,494,114 + -0.9 1,494,155 + -1.4 1,494,236 + +0.1 1,494,236 + +0.7 1,494,272 + -0.2 1,494,279 + -1.8 1,494,360 - DVU1420 0.20 -1.3 1,494,693 - -0.1 1,494,732 - -0.2 1,494,732 - -0.6 1,494,732 - -0.1 1,494,736 + -0.1 1,494,927 + DVU1421 0.16 -0.1 1,495,123 - DVU1421 0.58 -0.1 1,495,154 - DVU1421 0.65 -0.3 1,495,159 - DVU1421 0.66 +1.4 1,495,371 + -0.6 1,495,521 - DVU1422 0.13 -0.4
Or see this region's nucleotide sequence