Experiment: MoYLS4 with Nitrate 50mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cobS and DVU0915 are separated by 378 nucleotides DVU0915 and DVU0916 are separated by 33 nucleotides DVU0916 and atpE are separated by 104 nucleotides
DVU0914: cobS - cobalamin-5-phosphate synthase (TIGR), at 1,007,871 to 1,008,608
cobS
DVU0915: DVU0915 - conserved hypothetical protein (TIGR), at 1,008,987 to 1,009,775
DVU0915
DVU0916: DVU0916 - AT-rich DNA-binding protein (TIGR), at 1,009,809 to 1,010,453
DVU0916
DVU0917: atpE - ATP synthase F0, C subunit (TIGR), at 1,010,558 to 1,010,806
atpE
Position (kb)
1008
1009
1010 Strain fitness (log2 ratio)
-1
0
1
2 at 1007.989 kb on + strand, within cobS at 1008.097 kb on + strand, within cobS at 1008.146 kb on - strand, within cobS at 1008.158 kb on + strand, within cobS at 1008.204 kb on - strand, within cobS at 1008.237 kb on + strand, within cobS at 1008.281 kb on - strand, within cobS at 1008.406 kb on + strand, within cobS at 1008.414 kb on - strand, within cobS at 1008.525 kb on - strand, within cobS at 1008.612 kb on - strand at 1008.693 kb on + strand at 1008.698 kb on + strand at 1008.707 kb on + strand at 1008.715 kb on - strand at 1008.724 kb on + strand at 1008.807 kb on - strand at 1008.809 kb on + strand at 1008.812 kb on - strand at 1008.889 kb on - strand at 1008.915 kb on - strand at 1008.927 kb on - strand at 1008.964 kb on - strand at 1008.965 kb on + strand at 1008.975 kb on + strand at 1009.123 kb on + strand, within DVU0915 at 1009.131 kb on - strand, within DVU0915 at 1009.138 kb on - strand, within DVU0915 at 1009.250 kb on - strand, within DVU0915 at 1009.278 kb on - strand, within DVU0915 at 1009.312 kb on + strand, within DVU0915 at 1009.472 kb on + strand, within DVU0915 at 1009.485 kb on - strand, within DVU0915 at 1009.543 kb on - strand, within DVU0915 at 1009.543 kb on - strand, within DVU0915 at 1009.677 kb on + strand, within DVU0915 at 1009.697 kb on + strand at 1009.708 kb on + strand at 1009.721 kb on - strand at 1009.736 kb on - strand at 1009.803 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrate 50mM remove 1,007,989 + cobS DVU0914 0.16 -0.2 1,008,097 + cobS DVU0914 0.31 -1.0 1,008,146 - cobS DVU0914 0.37 -0.9 1,008,158 + cobS DVU0914 0.39 +0.4 1,008,204 - cobS DVU0914 0.45 -0.2 1,008,237 + cobS DVU0914 0.50 +0.6 1,008,281 - cobS DVU0914 0.56 +1.8 1,008,406 + cobS DVU0914 0.72 +0.7 1,008,414 - cobS DVU0914 0.74 -0.7 1,008,525 - cobS DVU0914 0.89 +0.1 1,008,612 - -0.1 1,008,693 + -0.0 1,008,698 + -0.2 1,008,707 + -0.2 1,008,715 - -0.4 1,008,724 + -0.3 1,008,807 - -0.2 1,008,809 + -0.1 1,008,812 - +0.4 1,008,889 - -0.1 1,008,915 - -0.1 1,008,927 - +0.0 1,008,964 - -0.5 1,008,965 + -0.6 1,008,975 + +1.4 1,009,123 + DVU0915 0.17 +0.1 1,009,131 - DVU0915 0.18 +1.3 1,009,138 - DVU0915 0.19 +0.8 1,009,250 - DVU0915 0.33 -0.3 1,009,278 - DVU0915 0.37 -0.4 1,009,312 + DVU0915 0.41 -0.2 1,009,472 + DVU0915 0.61 +1.2 1,009,485 - DVU0915 0.63 +0.2 1,009,543 - DVU0915 0.70 +0.8 1,009,543 - DVU0915 0.70 +0.4 1,009,677 + DVU0915 0.87 +0.2 1,009,697 + +0.4 1,009,708 + +0.6 1,009,721 - +0.6 1,009,736 - +0.6 1,009,803 + +0.3
Or see this region's nucleotide sequence