Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0915

Experiment: MoYLS4 with Nitrate 50mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcobS and DVU0915 are separated by 378 nucleotidesDVU0915 and DVU0916 are separated by 33 nucleotidesDVU0916 and atpE are separated by 104 nucleotides DVU0914: cobS - cobalamin-5-phosphate synthase (TIGR), at 1,007,871 to 1,008,608 cobS DVU0915: DVU0915 - conserved hypothetical protein (TIGR), at 1,008,987 to 1,009,775 DVU0915 DVU0916: DVU0916 - AT-rich DNA-binding protein (TIGR), at 1,009,809 to 1,010,453 DVU0916 DVU0917: atpE - ATP synthase F0, C subunit (TIGR), at 1,010,558 to 1,010,806 atpE Position (kb) 1008 1009 1010Strain fitness (log2 ratio) -1 0 1 2at 1007.989 kb on + strand, within cobSat 1008.097 kb on + strand, within cobSat 1008.146 kb on - strand, within cobSat 1008.158 kb on + strand, within cobSat 1008.204 kb on - strand, within cobSat 1008.237 kb on + strand, within cobSat 1008.281 kb on - strand, within cobSat 1008.406 kb on + strand, within cobSat 1008.414 kb on - strand, within cobSat 1008.525 kb on - strand, within cobSat 1008.612 kb on - strandat 1008.693 kb on + strandat 1008.698 kb on + strandat 1008.707 kb on + strandat 1008.715 kb on - strandat 1008.724 kb on + strandat 1008.807 kb on - strandat 1008.809 kb on + strandat 1008.812 kb on - strandat 1008.889 kb on - strandat 1008.915 kb on - strandat 1008.927 kb on - strandat 1008.964 kb on - strandat 1008.965 kb on + strandat 1008.975 kb on + strandat 1009.123 kb on + strand, within DVU0915at 1009.131 kb on - strand, within DVU0915at 1009.138 kb on - strand, within DVU0915at 1009.250 kb on - strand, within DVU0915at 1009.278 kb on - strand, within DVU0915at 1009.312 kb on + strand, within DVU0915at 1009.472 kb on + strand, within DVU0915at 1009.485 kb on - strand, within DVU0915at 1009.543 kb on - strand, within DVU0915at 1009.543 kb on - strand, within DVU0915at 1009.677 kb on + strand, within DVU0915at 1009.697 kb on + strandat 1009.708 kb on + strandat 1009.721 kb on - strandat 1009.736 kb on - strandat 1009.803 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nitrate 50mM
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1,007,989 + cobS DVU0914 0.16 -0.2
1,008,097 + cobS DVU0914 0.31 -1.0
1,008,146 - cobS DVU0914 0.37 -0.9
1,008,158 + cobS DVU0914 0.39 +0.4
1,008,204 - cobS DVU0914 0.45 -0.2
1,008,237 + cobS DVU0914 0.50 +0.6
1,008,281 - cobS DVU0914 0.56 +1.8
1,008,406 + cobS DVU0914 0.72 +0.7
1,008,414 - cobS DVU0914 0.74 -0.7
1,008,525 - cobS DVU0914 0.89 +0.1
1,008,612 - -0.1
1,008,693 + -0.0
1,008,698 + -0.2
1,008,707 + -0.2
1,008,715 - -0.4
1,008,724 + -0.3
1,008,807 - -0.2
1,008,809 + -0.1
1,008,812 - +0.4
1,008,889 - -0.1
1,008,915 - -0.1
1,008,927 - +0.0
1,008,964 - -0.5
1,008,965 + -0.6
1,008,975 + +1.4
1,009,123 + DVU0915 0.17 +0.1
1,009,131 - DVU0915 0.18 +1.3
1,009,138 - DVU0915 0.19 +0.8
1,009,250 - DVU0915 0.33 -0.3
1,009,278 - DVU0915 0.37 -0.4
1,009,312 + DVU0915 0.41 -0.2
1,009,472 + DVU0915 0.61 +1.2
1,009,485 - DVU0915 0.63 +0.2
1,009,543 - DVU0915 0.70 +0.8
1,009,543 - DVU0915 0.70 +0.4
1,009,677 + DVU0915 0.87 +0.2
1,009,697 + +0.4
1,009,708 + +0.6
1,009,721 - +0.6
1,009,736 - +0.6
1,009,803 + +0.3

Or see this region's nucleotide sequence