Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17090 and HMPREF1058_RS17085 are separated by 16 nucleotides HMPREF1058_RS17085 and HMPREF1058_RS17080 overlap by 14 nucleotides HMPREF1058_RS17080 and HMPREF1058_RS17075 are separated by 166 nucleotides
HMPREF1058_RS17090: HMPREF1058_RS17090 - hypothetical protein, at 521,934 to 522,686
_RS17090
HMPREF1058_RS17085: HMPREF1058_RS17085 - LptE family protein, at 522,703 to 523,230
_RS17085
HMPREF1058_RS17080: HMPREF1058_RS17080 - sigma-54-dependent Fis family transcriptional regulator, at 523,217 to 524,482
_RS17080
HMPREF1058_RS17075: HMPREF1058_RS17075 - inositol-3-phosphate synthase, at 524,649 to 525,956
_RS17075
Position (kb) 523
524
525 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 522.234 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.262 kb on - strand, within HMPREF1058_RS17090 at 522.262 kb on - strand, within HMPREF1058_RS17090 at 522.263 kb on + strand, within HMPREF1058_RS17090 at 522.305 kb on + strand, within HMPREF1058_RS17090 at 522.305 kb on + strand, within HMPREF1058_RS17090 at 522.306 kb on - strand, within HMPREF1058_RS17090 at 522.319 kb on - strand, within HMPREF1058_RS17090 at 522.375 kb on - strand, within HMPREF1058_RS17090 at 522.416 kb on + strand, within HMPREF1058_RS17090 at 522.444 kb on + strand, within HMPREF1058_RS17090 at 522.444 kb on + strand, within HMPREF1058_RS17090 at 522.499 kb on + strand, within HMPREF1058_RS17090 at 522.499 kb on + strand, within HMPREF1058_RS17090 at 522.499 kb on + strand, within HMPREF1058_RS17090 at 522.500 kb on - strand, within HMPREF1058_RS17090 at 522.512 kb on + strand, within HMPREF1058_RS17090 at 522.516 kb on + strand, within HMPREF1058_RS17090 at 522.517 kb on - strand, within HMPREF1058_RS17090 at 522.623 kb on - strand at 522.668 kb on - strand at 522.669 kb on + strand at 522.681 kb on + strand at 522.721 kb on - strand at 523.460 kb on - strand, within HMPREF1058_RS17080 at 523.508 kb on - strand, within HMPREF1058_RS17080 at 523.861 kb on - strand, within HMPREF1058_RS17080 at 523.966 kb on - strand, within HMPREF1058_RS17080 at 524.492 kb on - strand at 524.495 kb on - strand at 524.495 kb on - strand at 524.556 kb on + strand at 524.557 kb on - strand at 524.580 kb on + strand at 524.646 kb on - strand at 524.646 kb on - strand at 524.708 kb on + strand at 524.709 kb on - strand at 524.714 kb on - strand at 524.753 kb on + strand at 524.842 kb on - strand, within HMPREF1058_RS17075 at 524.900 kb on + strand, within HMPREF1058_RS17075 at 524.957 kb on + strand, within HMPREF1058_RS17075 at 524.981 kb on - strand, within HMPREF1058_RS17075 at 524.991 kb on + strand, within HMPREF1058_RS17075 at 524.991 kb on + strand, within HMPREF1058_RS17075 at 524.991 kb on + strand, within HMPREF1058_RS17075 at 524.992 kb on - strand, within HMPREF1058_RS17075 at 524.996 kb on + strand, within HMPREF1058_RS17075 at 524.997 kb on - strand, within HMPREF1058_RS17075 at 525.005 kb on - strand, within HMPREF1058_RS17075 at 525.056 kb on + strand, within HMPREF1058_RS17075 at 525.057 kb on - strand, within HMPREF1058_RS17075 at 525.103 kb on - strand, within HMPREF1058_RS17075 at 525.197 kb on + strand, within HMPREF1058_RS17075 at 525.269 kb on + strand, within HMPREF1058_RS17075 at 525.270 kb on - strand, within HMPREF1058_RS17075 at 525.290 kb on + strand, within HMPREF1058_RS17075 at 525.337 kb on + strand, within HMPREF1058_RS17075 at 525.344 kb on - strand, within HMPREF1058_RS17075 at 525.386 kb on + strand, within HMPREF1058_RS17075 at 525.439 kb on + strand, within HMPREF1058_RS17075 at 525.440 kb on - strand, within HMPREF1058_RS17075 at 525.440 kb on - strand, within HMPREF1058_RS17075
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4 remove 522,234 + HMPREF1058_RS17090 0.40 -2.4 522,261 + HMPREF1058_RS17090 0.43 +0.6 522,261 + HMPREF1058_RS17090 0.43 -0.5 522,261 + HMPREF1058_RS17090 0.43 -0.9 522,261 + HMPREF1058_RS17090 0.43 +0.1 522,262 - HMPREF1058_RS17090 0.44 -0.6 522,262 - HMPREF1058_RS17090 0.44 -0.2 522,263 + HMPREF1058_RS17090 0.44 -2.7 522,305 + HMPREF1058_RS17090 0.49 -1.5 522,305 + HMPREF1058_RS17090 0.49 -2.5 522,306 - HMPREF1058_RS17090 0.49 -0.4 522,319 - HMPREF1058_RS17090 0.51 -1.3 522,375 - HMPREF1058_RS17090 0.59 -0.2 522,416 + HMPREF1058_RS17090 0.64 +0.3 522,444 + HMPREF1058_RS17090 0.68 -2.7 522,444 + HMPREF1058_RS17090 0.68 -2.2 522,499 + HMPREF1058_RS17090 0.75 -1.1 522,499 + HMPREF1058_RS17090 0.75 -0.0 522,499 + HMPREF1058_RS17090 0.75 -2.5 522,500 - HMPREF1058_RS17090 0.75 -0.5 522,512 + HMPREF1058_RS17090 0.77 -2.0 522,516 + HMPREF1058_RS17090 0.77 -0.2 522,517 - HMPREF1058_RS17090 0.77 -0.7 522,623 - -0.9 522,668 - -1.4 522,669 + -1.0 522,681 + -0.7 522,721 - -6.3 523,460 - HMPREF1058_RS17080 0.19 -1.5 523,508 - HMPREF1058_RS17080 0.23 -3.1 523,861 - HMPREF1058_RS17080 0.51 -1.5 523,966 - HMPREF1058_RS17080 0.59 -0.9 524,492 - -1.6 524,495 - +0.8 524,495 - -0.4 524,556 + -0.5 524,557 - +0.1 524,580 + -0.0 524,646 - +0.5 524,646 - +0.1 524,708 + -0.7 524,709 - -0.1 524,714 - +0.1 524,753 + -0.7 524,842 - HMPREF1058_RS17075 0.15 -0.1 524,900 + HMPREF1058_RS17075 0.19 -0.7 524,957 + HMPREF1058_RS17075 0.24 -0.6 524,981 - HMPREF1058_RS17075 0.25 -0.8 524,991 + HMPREF1058_RS17075 0.26 -1.2 524,991 + HMPREF1058_RS17075 0.26 -0.4 524,991 + HMPREF1058_RS17075 0.26 -0.2 524,992 - HMPREF1058_RS17075 0.26 +0.6 524,996 + HMPREF1058_RS17075 0.27 +1.5 524,997 - HMPREF1058_RS17075 0.27 -3.2 525,005 - HMPREF1058_RS17075 0.27 +0.0 525,056 + HMPREF1058_RS17075 0.31 -0.2 525,057 - HMPREF1058_RS17075 0.31 -0.5 525,103 - HMPREF1058_RS17075 0.35 -0.4 525,197 + HMPREF1058_RS17075 0.42 -2.9 525,269 + HMPREF1058_RS17075 0.47 -1.9 525,270 - HMPREF1058_RS17075 0.47 -0.3 525,290 + HMPREF1058_RS17075 0.49 -0.3 525,337 + HMPREF1058_RS17075 0.53 -1.5 525,344 - HMPREF1058_RS17075 0.53 +0.0 525,386 + HMPREF1058_RS17075 0.56 -1.1 525,439 + HMPREF1058_RS17075 0.60 -1.7 525,440 - HMPREF1058_RS17075 0.60 -0.1 525,440 - HMPREF1058_RS17075 0.60 +0.0
Or see this region's nucleotide sequence