Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16265 and HMPREF1058_RS16260 are separated by 188 nucleotides HMPREF1058_RS16260 and HMPREF1058_RS16255 overlap by 4 nucleotides
HMPREF1058_RS16265: HMPREF1058_RS16265 - SLC13 family permease, at 718,880 to 720,742
_RS16265
HMPREF1058_RS16260: HMPREF1058_RS16260 - hotdog fold thioesterase, at 720,931 to 721,338
_RS16260
HMPREF1058_RS16255: HMPREF1058_RS16255 - isochorismate synthase, at 721,335 to 722,477
_RS16255
Position (kb) 720
721
722 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 719.975 kb on + strand, within HMPREF1058_RS16265 at 719.975 kb on + strand, within HMPREF1058_RS16265 at 719.978 kb on - strand, within HMPREF1058_RS16265 at 719.988 kb on + strand, within HMPREF1058_RS16265 at 720.011 kb on + strand, within HMPREF1058_RS16265 at 720.164 kb on - strand, within HMPREF1058_RS16265 at 720.164 kb on - strand, within HMPREF1058_RS16265 at 720.188 kb on - strand, within HMPREF1058_RS16265 at 720.310 kb on + strand, within HMPREF1058_RS16265 at 720.422 kb on - strand, within HMPREF1058_RS16265 at 720.490 kb on + strand, within HMPREF1058_RS16265 at 720.580 kb on + strand at 720.581 kb on - strand at 720.581 kb on - strand at 720.629 kb on + strand at 720.683 kb on + strand at 720.716 kb on + strand at 720.716 kb on + strand at 720.724 kb on + strand at 720.743 kb on - strand at 720.784 kb on + strand at 720.785 kb on - strand at 720.853 kb on + strand at 720.883 kb on + strand at 720.891 kb on - strand at 720.927 kb on - strand at 721.041 kb on - strand, within HMPREF1058_RS16260 at 721.126 kb on - strand, within HMPREF1058_RS16260 at 721.151 kb on - strand, within HMPREF1058_RS16260 at 721.169 kb on + strand, within HMPREF1058_RS16260 at 721.255 kb on - strand, within HMPREF1058_RS16260 at 721.255 kb on - strand, within HMPREF1058_RS16260 at 721.257 kb on - strand, within HMPREF1058_RS16260 at 721.257 kb on - strand, within HMPREF1058_RS16260 at 721.265 kb on + strand, within HMPREF1058_RS16260 at 721.265 kb on + strand, within HMPREF1058_RS16260 at 721.265 kb on + strand, within HMPREF1058_RS16260 at 721.269 kb on + strand, within HMPREF1058_RS16260 at 721.270 kb on - strand, within HMPREF1058_RS16260 at 721.349 kb on + strand at 721.350 kb on - strand at 721.351 kb on + strand at 721.351 kb on + strand at 721.352 kb on - strand at 721.356 kb on - strand at 721.550 kb on - strand, within HMPREF1058_RS16255 at 721.699 kb on - strand, within HMPREF1058_RS16255 at 721.701 kb on - strand, within HMPREF1058_RS16255 at 721.854 kb on + strand, within HMPREF1058_RS16255 at 721.854 kb on + strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 722.022 kb on + strand, within HMPREF1058_RS16255 at 722.022 kb on + strand, within HMPREF1058_RS16255 at 722.023 kb on - strand, within HMPREF1058_RS16255 at 722.023 kb on - strand, within HMPREF1058_RS16255 at 722.034 kb on + strand, within HMPREF1058_RS16255 at 722.090 kb on + strand, within HMPREF1058_RS16255 at 722.114 kb on - strand, within HMPREF1058_RS16255 at 722.159 kb on + strand, within HMPREF1058_RS16255 at 722.160 kb on - strand, within HMPREF1058_RS16255 at 722.266 kb on - strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.317 kb on - strand, within HMPREF1058_RS16255 at 722.317 kb on - strand, within HMPREF1058_RS16255
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4 remove 719,975 + HMPREF1058_RS16265 0.59 -0.1 719,975 + HMPREF1058_RS16265 0.59 -0.3 719,978 - HMPREF1058_RS16265 0.59 +0.2 719,988 + HMPREF1058_RS16265 0.59 -0.2 720,011 + HMPREF1058_RS16265 0.61 -0.1 720,164 - HMPREF1058_RS16265 0.69 -0.3 720,164 - HMPREF1058_RS16265 0.69 -0.3 720,188 - HMPREF1058_RS16265 0.70 +0.2 720,310 + HMPREF1058_RS16265 0.77 +0.6 720,422 - HMPREF1058_RS16265 0.83 +0.6 720,490 + HMPREF1058_RS16265 0.86 -0.3 720,580 + +1.0 720,581 - +0.3 720,581 - +0.8 720,629 + +0.4 720,683 + +0.1 720,716 + +0.8 720,716 + +0.0 720,724 + -0.4 720,743 - +0.2 720,784 + -0.9 720,785 - -0.4 720,853 + -1.0 720,883 + +0.2 720,891 - -0.3 720,927 - +2.4 721,041 - HMPREF1058_RS16260 0.27 +2.4 721,126 - HMPREF1058_RS16260 0.48 +2.5 721,151 - HMPREF1058_RS16260 0.54 +0.7 721,169 + HMPREF1058_RS16260 0.58 -4.7 721,255 - HMPREF1058_RS16260 0.79 +2.8 721,255 - HMPREF1058_RS16260 0.79 +2.5 721,257 - HMPREF1058_RS16260 0.80 +2.1 721,257 - HMPREF1058_RS16260 0.80 +3.1 721,265 + HMPREF1058_RS16260 0.82 -4.0 721,265 + HMPREF1058_RS16260 0.82 -4.9 721,265 + HMPREF1058_RS16260 0.82 -6.3 721,269 + HMPREF1058_RS16260 0.83 -3.8 721,270 - HMPREF1058_RS16260 0.83 +2.6 721,349 + +1.7 721,350 - +2.4 721,351 + +0.5 721,351 + -2.7 721,352 - +0.6 721,356 - +2.3 721,550 - HMPREF1058_RS16255 0.19 -0.0 721,699 - HMPREF1058_RS16255 0.32 +2.4 721,701 - HMPREF1058_RS16255 0.32 +1.5 721,854 + HMPREF1058_RS16255 0.45 +0.3 721,854 + HMPREF1058_RS16255 0.45 -0.5 721,855 - HMPREF1058_RS16255 0.45 +2.6 721,855 - HMPREF1058_RS16255 0.45 +2.6 721,855 - HMPREF1058_RS16255 0.45 +2.6 722,022 + HMPREF1058_RS16255 0.60 -0.4 722,022 + HMPREF1058_RS16255 0.60 -0.3 722,023 - HMPREF1058_RS16255 0.60 +2.3 722,023 - HMPREF1058_RS16255 0.60 +2.5 722,034 + HMPREF1058_RS16255 0.61 -0.6 722,090 + HMPREF1058_RS16255 0.66 -0.3 722,114 - HMPREF1058_RS16255 0.68 +3.0 722,159 + HMPREF1058_RS16255 0.72 -0.4 722,160 - HMPREF1058_RS16255 0.72 +2.2 722,266 - HMPREF1058_RS16255 0.81 +3.3 722,316 + HMPREF1058_RS16255 0.86 -0.7 722,316 + HMPREF1058_RS16255 0.86 -2.3 722,316 + HMPREF1058_RS16255 0.86 -0.0 722,317 - HMPREF1058_RS16255 0.86 +0.4 722,317 - HMPREF1058_RS16255 0.86 +2.2
Or see this region's nucleotide sequence