Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06870

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06875 and HMPREF1058_RS06870 are separated by 23 nucleotidesHMPREF1058_RS06870 and HMPREF1058_RS06865 are separated by 167 nucleotides HMPREF1058_RS06875: HMPREF1058_RS06875 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 373,515 to 374,591 _RS06875 HMPREF1058_RS06870: HMPREF1058_RS06870 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit, at 374,615 to 377,842 _RS06870 HMPREF1058_RS06865: HMPREF1058_RS06865 - PAS domain-containing protein, at 378,010 to 380,355 _RS06865 Position (kb) 374 375 376 377 378Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 373.676 kb on - strand, within HMPREF1058_RS06875at 373.676 kb on - strand, within HMPREF1058_RS06875at 373.760 kb on + strand, within HMPREF1058_RS06875at 373.804 kb on - strand, within HMPREF1058_RS06875at 373.929 kb on - strand, within HMPREF1058_RS06875at 373.937 kb on - strand, within HMPREF1058_RS06875at 373.989 kb on + strand, within HMPREF1058_RS06875at 373.990 kb on - strand, within HMPREF1058_RS06875at 373.997 kb on + strand, within HMPREF1058_RS06875at 373.997 kb on + strand, within HMPREF1058_RS06875at 373.997 kb on + strand, within HMPREF1058_RS06875at 374.002 kb on + strand, within HMPREF1058_RS06875at 374.025 kb on + strand, within HMPREF1058_RS06875at 374.316 kb on + strand, within HMPREF1058_RS06875at 374.316 kb on + strand, within HMPREF1058_RS06875at 374.360 kb on + strand, within HMPREF1058_RS06875at 374.417 kb on + strand, within HMPREF1058_RS06875at 374.418 kb on - strand, within HMPREF1058_RS06875at 374.492 kb on + strandat 374.492 kb on + strandat 374.493 kb on - strandat 374.493 kb on - strandat 374.615 kb on - strandat 374.629 kb on - strandat 374.638 kb on - strandat 374.640 kb on + strandat 374.640 kb on + strandat 374.644 kb on - strandat 375.093 kb on + strand, within HMPREF1058_RS06870at 375.254 kb on + strand, within HMPREF1058_RS06870at 375.281 kb on - strand, within HMPREF1058_RS06870at 375.295 kb on - strand, within HMPREF1058_RS06870at 375.301 kb on + strand, within HMPREF1058_RS06870at 375.383 kb on + strand, within HMPREF1058_RS06870at 375.384 kb on - strand, within HMPREF1058_RS06870at 375.455 kb on + strand, within HMPREF1058_RS06870at 375.846 kb on + strand, within HMPREF1058_RS06870at 375.846 kb on + strand, within HMPREF1058_RS06870at 375.846 kb on + strand, within HMPREF1058_RS06870at 375.846 kb on + strand, within HMPREF1058_RS06870at 375.889 kb on + strand, within HMPREF1058_RS06870at 375.890 kb on - strand, within HMPREF1058_RS06870at 375.890 kb on - strand, within HMPREF1058_RS06870at 376.145 kb on - strand, within HMPREF1058_RS06870at 376.151 kb on + strand, within HMPREF1058_RS06870at 376.156 kb on - strand, within HMPREF1058_RS06870at 376.156 kb on - strand, within HMPREF1058_RS06870at 376.159 kb on + strand, within HMPREF1058_RS06870at 376.160 kb on - strand, within HMPREF1058_RS06870at 376.241 kb on + strand, within HMPREF1058_RS06870at 376.242 kb on - strand, within HMPREF1058_RS06870at 376.248 kb on - strand, within HMPREF1058_RS06870at 376.256 kb on + strand, within HMPREF1058_RS06870at 376.283 kb on + strand, within HMPREF1058_RS06870at 376.287 kb on + strand, within HMPREF1058_RS06870at 376.297 kb on + strand, within HMPREF1058_RS06870at 376.421 kb on + strand, within HMPREF1058_RS06870at 376.454 kb on - strand, within HMPREF1058_RS06870at 376.539 kb on + strand, within HMPREF1058_RS06870at 376.597 kb on - strand, within HMPREF1058_RS06870at 376.597 kb on - strand, within HMPREF1058_RS06870at 376.744 kb on - strand, within HMPREF1058_RS06870at 376.772 kb on + strand, within HMPREF1058_RS06870at 377.083 kb on + strand, within HMPREF1058_RS06870at 377.137 kb on - strand, within HMPREF1058_RS06870at 377.147 kb on - strand, within HMPREF1058_RS06870at 377.203 kb on + strand, within HMPREF1058_RS06870at 377.285 kb on - strand, within HMPREF1058_RS06870at 377.347 kb on + strand, within HMPREF1058_RS06870at 377.347 kb on + strand, within HMPREF1058_RS06870at 377.348 kb on - strand, within HMPREF1058_RS06870at 377.368 kb on - strand, within HMPREF1058_RS06870at 377.525 kb on - strandat 377.591 kb on + strandat 377.650 kb on - strandat 377.707 kb on + strandat 377.707 kb on + strandat 377.708 kb on - strandat 377.712 kb on + strandat 377.836 kb on + strandat 377.837 kb on - strandat 377.896 kb on + strandat 377.896 kb on + strandat 377.901 kb on - strandat 377.901 kb on - strandat 377.940 kb on + strandat 377.955 kb on + strandat 377.999 kb on - strandat 377.999 kb on - strandat 378.030 kb on + strandat 378.036 kb on - strandat 378.153 kb on - strandat 378.311 kb on + strand, within HMPREF1058_RS06865at 378.311 kb on + strand, within HMPREF1058_RS06865at 378.311 kb on + strand, within HMPREF1058_RS06865at 378.315 kb on + strand, within HMPREF1058_RS06865at 378.315 kb on + strand, within HMPREF1058_RS06865at 378.316 kb on - strand, within HMPREF1058_RS06865at 378.431 kb on - strand, within HMPREF1058_RS06865at 378.605 kb on + strand, within HMPREF1058_RS06865at 378.605 kb on + strand, within HMPREF1058_RS06865at 378.645 kb on + strand, within HMPREF1058_RS06865at 378.649 kb on - strand, within HMPREF1058_RS06865at 378.768 kb on + strand, within HMPREF1058_RS06865

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4
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373,676 - HMPREF1058_RS06875 0.15 -5.4
373,676 - HMPREF1058_RS06875 0.15 -4.0
373,760 + HMPREF1058_RS06875 0.23 -5.4
373,804 - HMPREF1058_RS06875 0.27 -4.7
373,929 - HMPREF1058_RS06875 0.38 -4.7
373,937 - HMPREF1058_RS06875 0.39 -4.3
373,989 + HMPREF1058_RS06875 0.44 -5.4
373,990 - HMPREF1058_RS06875 0.44 -3.8
373,997 + HMPREF1058_RS06875 0.45 -4.8
373,997 + HMPREF1058_RS06875 0.45 -4.6
373,997 + HMPREF1058_RS06875 0.45 -2.5
374,002 + HMPREF1058_RS06875 0.45 -6.4
374,025 + HMPREF1058_RS06875 0.47 -5.4
374,316 + HMPREF1058_RS06875 0.74 -4.4
374,316 + HMPREF1058_RS06875 0.74 -5.2
374,360 + HMPREF1058_RS06875 0.78 -5.5
374,417 + HMPREF1058_RS06875 0.84 -5.1
374,418 - HMPREF1058_RS06875 0.84 -4.2
374,492 + -4.0
374,492 + -4.2
374,493 - -4.9
374,493 - -5.7
374,615 - -1.9
374,629 - -6.1
374,638 - -1.9
374,640 + -2.5
374,640 + -2.7
374,644 - -5.4
375,093 + HMPREF1058_RS06870 0.15 -4.0
375,254 + HMPREF1058_RS06870 0.20 -3.4
375,281 - HMPREF1058_RS06870 0.21 -3.5
375,295 - HMPREF1058_RS06870 0.21 -4.3
375,301 + HMPREF1058_RS06870 0.21 -4.2
375,383 + HMPREF1058_RS06870 0.24 -4.8
375,384 - HMPREF1058_RS06870 0.24 -3.5
375,455 + HMPREF1058_RS06870 0.26 -5.6
375,846 + HMPREF1058_RS06870 0.38 -5.6
375,846 + HMPREF1058_RS06870 0.38 -4.0
375,846 + HMPREF1058_RS06870 0.38 -4.8
375,846 + HMPREF1058_RS06870 0.38 -7.4
375,889 + HMPREF1058_RS06870 0.39 -5.8
375,890 - HMPREF1058_RS06870 0.39 -5.6
375,890 - HMPREF1058_RS06870 0.39 -3.8
376,145 - HMPREF1058_RS06870 0.47 -1.5
376,151 + HMPREF1058_RS06870 0.48 -6.4
376,156 - HMPREF1058_RS06870 0.48 -6.1
376,156 - HMPREF1058_RS06870 0.48 -3.4
376,159 + HMPREF1058_RS06870 0.48 -5.9
376,160 - HMPREF1058_RS06870 0.48 -5.5
376,241 + HMPREF1058_RS06870 0.50 -4.1
376,242 - HMPREF1058_RS06870 0.50 -4.9
376,248 - HMPREF1058_RS06870 0.51 -2.9
376,256 + HMPREF1058_RS06870 0.51 -5.6
376,283 + HMPREF1058_RS06870 0.52 -1.9
376,287 + HMPREF1058_RS06870 0.52 -3.6
376,297 + HMPREF1058_RS06870 0.52 -3.3
376,421 + HMPREF1058_RS06870 0.56 -3.4
376,454 - HMPREF1058_RS06870 0.57 -3.6
376,539 + HMPREF1058_RS06870 0.60 -5.7
376,597 - HMPREF1058_RS06870 0.61 -5.6
376,597 - HMPREF1058_RS06870 0.61 -1.5
376,744 - HMPREF1058_RS06870 0.66 -4.6
376,772 + HMPREF1058_RS06870 0.67 -5.5
377,083 + HMPREF1058_RS06870 0.76 -6.5
377,137 - HMPREF1058_RS06870 0.78 -3.7
377,147 - HMPREF1058_RS06870 0.78 -6.7
377,203 + HMPREF1058_RS06870 0.80 -4.1
377,285 - HMPREF1058_RS06870 0.83 -6.8
377,347 + HMPREF1058_RS06870 0.85 -6.5
377,347 + HMPREF1058_RS06870 0.85 -5.8
377,348 - HMPREF1058_RS06870 0.85 -7.3
377,368 - HMPREF1058_RS06870 0.85 -4.1
377,525 - -5.4
377,591 + -1.9
377,650 - -4.2
377,707 + -5.2
377,707 + -6.8
377,708 - -4.0
377,712 + -3.2
377,836 + -0.5
377,837 - -1.4
377,896 + -0.4
377,896 + -0.7
377,901 - -0.4
377,901 - -1.4
377,940 + +1.3
377,955 + -0.8
377,999 - +0.3
377,999 - +0.6
378,030 + -0.0
378,036 - -1.9
378,153 - -0.2
378,311 + HMPREF1058_RS06865 0.13 -0.3
378,311 + HMPREF1058_RS06865 0.13 -0.2
378,311 + HMPREF1058_RS06865 0.13 -0.4
378,315 + HMPREF1058_RS06865 0.13 -0.1
378,315 + HMPREF1058_RS06865 0.13 -1.5
378,316 - HMPREF1058_RS06865 0.13 +0.3
378,431 - HMPREF1058_RS06865 0.18 +0.2
378,605 + HMPREF1058_RS06865 0.25 -0.5
378,605 + HMPREF1058_RS06865 0.25 +0.5
378,645 + HMPREF1058_RS06865 0.27 +0.3
378,649 - HMPREF1058_RS06865 0.27 +0.1
378,768 + HMPREF1058_RS06865 0.32 -1.1

Or see this region's nucleotide sequence