Experiment: MoYLS4 with Tetracyclin 0.001mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgI and DVU0517 are separated by 1 nucleotides DVU0517 and DVU0518 are separated by 23 nucleotides DVU0518 and DVU0519 overlap by 1 nucleotides
DVU0516: flgI - flagellar P-ring protein FlgI (TIGR), at 589,056 to 590,192
flgI
DVU0517: DVU0517 - peptidase, M23/M37 family (TIGR), at 590,194 to 592,026
DVU0517
DVU0518: DVU0518 - hypothetical protein (TIGR), at 592,050 to 592,514
DVU0518
DVU0519: DVU0519 - flagellar hook-associated protein FlgK, putative (TIGR), at 592,514 to 594,610
DVU0519
Position (kb) 590
591
592
593 Strain fitness (log2 ratio) -2
-1
0
1 at 589.195 kb on - strand, within flgI at 589.209 kb on - strand, within flgI at 589.289 kb on + strand, within flgI at 589.332 kb on - strand, within flgI at 589.406 kb on + strand, within flgI at 589.446 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.481 kb on - strand, within flgI at 589.483 kb on - strand, within flgI at 589.641 kb on + strand, within flgI at 589.670 kb on - strand, within flgI at 589.672 kb on + strand, within flgI at 589.717 kb on - strand, within flgI at 589.717 kb on - strand, within flgI at 589.744 kb on - strand, within flgI at 589.826 kb on - strand, within flgI at 589.853 kb on - strand, within flgI at 589.894 kb on + strand, within flgI at 590.137 kb on - strand at 590.195 kb on + strand at 590.270 kb on + strand at 590.279 kb on + strand at 590.407 kb on + strand, within DVU0517 at 590.417 kb on + strand, within DVU0517 at 590.420 kb on - strand, within DVU0517 at 590.425 kb on + strand, within DVU0517 at 590.425 kb on - strand, within DVU0517 at 590.425 kb on - strand, within DVU0517 at 590.458 kb on - strand, within DVU0517 at 590.540 kb on - strand, within DVU0517 at 590.547 kb on + strand, within DVU0517 at 590.560 kb on - strand, within DVU0517 at 590.676 kb on + strand, within DVU0517 at 590.685 kb on - strand, within DVU0517 at 590.751 kb on - strand, within DVU0517 at 590.760 kb on + strand, within DVU0517 at 590.866 kb on + strand, within DVU0517 at 590.899 kb on + strand, within DVU0517 at 590.914 kb on + strand, within DVU0517 at 590.922 kb on - strand, within DVU0517 at 590.981 kb on + strand, within DVU0517 at 590.988 kb on + strand, within DVU0517 at 590.991 kb on - strand, within DVU0517 at 590.991 kb on - strand, within DVU0517 at 591.301 kb on + strand, within DVU0517 at 591.335 kb on - strand, within DVU0517 at 591.344 kb on + strand, within DVU0517 at 591.400 kb on - strand, within DVU0517 at 591.461 kb on - strand, within DVU0517 at 591.461 kb on - strand, within DVU0517 at 591.493 kb on - strand, within DVU0517 at 591.561 kb on - strand, within DVU0517 at 592.036 kb on + strand at 592.050 kb on + strand at 592.050 kb on + strand at 592.091 kb on + strand at 592.091 kb on + strand at 592.099 kb on - strand, within DVU0518 at 592.099 kb on - strand, within DVU0518 at 592.176 kb on - strand, within DVU0518 at 592.231 kb on - strand, within DVU0518 at 592.251 kb on + strand, within DVU0518 at 592.281 kb on + strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.306 kb on - strand, within DVU0518 at 592.329 kb on + strand, within DVU0518 at 592.334 kb on + strand, within DVU0518 at 592.337 kb on - strand, within DVU0518 at 592.337 kb on - strand, within DVU0518 at 592.342 kb on - strand, within DVU0518 at 592.363 kb on - strand, within DVU0518 at 592.372 kb on + strand, within DVU0518 at 592.376 kb on + strand, within DVU0518 at 592.433 kb on + strand, within DVU0518 at 592.433 kb on + strand, within DVU0518 at 592.539 kb on - strand at 592.539 kb on - strand at 592.574 kb on + strand at 592.639 kb on - strand at 592.791 kb on - strand, within DVU0519 at 592.847 kb on + strand, within DVU0519 at 592.950 kb on - strand, within DVU0519 at 592.968 kb on + strand, within DVU0519
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tetracyclin 0.001mg/mL remove 589,195 - flgI DVU0516 0.12 -0.1 589,209 - flgI DVU0516 0.13 -0.0 589,289 + flgI DVU0516 0.20 -0.1 589,332 - flgI DVU0516 0.24 -1.1 589,406 + flgI DVU0516 0.31 +0.2 589,446 + flgI DVU0516 0.34 -0.2 589,475 + flgI DVU0516 0.37 -0.1 589,475 + flgI DVU0516 0.37 +0.3 589,475 + flgI DVU0516 0.37 -0.6 589,481 - flgI DVU0516 0.37 +0.7 589,483 - flgI DVU0516 0.38 +0.2 589,641 + flgI DVU0516 0.51 -0.1 589,670 - flgI DVU0516 0.54 +0.2 589,672 + flgI DVU0516 0.54 +0.1 589,717 - flgI DVU0516 0.58 +0.1 589,717 - flgI DVU0516 0.58 +0.1 589,744 - flgI DVU0516 0.61 -0.1 589,826 - flgI DVU0516 0.68 -0.2 589,853 - flgI DVU0516 0.70 -0.3 589,894 + flgI DVU0516 0.74 -0.0 590,137 - -0.6 590,195 + -0.5 590,270 + -0.9 590,279 + -0.1 590,407 + DVU0517 0.12 -0.1 590,417 + DVU0517 0.12 -0.3 590,420 - DVU0517 0.12 -0.1 590,425 + DVU0517 0.13 -1.0 590,425 - DVU0517 0.13 -1.3 590,425 - DVU0517 0.13 -0.3 590,458 - DVU0517 0.14 -0.3 590,540 - DVU0517 0.19 +1.1 590,547 + DVU0517 0.19 -0.8 590,560 - DVU0517 0.20 -0.0 590,676 + DVU0517 0.26 -0.6 590,685 - DVU0517 0.27 -0.3 590,751 - DVU0517 0.30 -0.2 590,760 + DVU0517 0.31 +0.1 590,866 + DVU0517 0.37 +0.1 590,899 + DVU0517 0.38 -0.2 590,914 + DVU0517 0.39 -0.7 590,922 - DVU0517 0.40 +0.4 590,981 + DVU0517 0.43 -0.7 590,988 + DVU0517 0.43 +0.1 590,991 - DVU0517 0.43 -1.3 590,991 - DVU0517 0.43 -0.1 591,301 + DVU0517 0.60 -0.2 591,335 - DVU0517 0.62 -0.2 591,344 + DVU0517 0.63 -1.8 591,400 - DVU0517 0.66 -0.9 591,461 - DVU0517 0.69 -0.0 591,461 - DVU0517 0.69 -0.6 591,493 - DVU0517 0.71 -0.1 591,561 - DVU0517 0.75 -0.1 592,036 + -0.5 592,050 + -1.0 592,050 + +0.1 592,091 + -0.6 592,091 + -0.5 592,099 - DVU0518 0.11 -0.5 592,099 - DVU0518 0.11 -0.2 592,176 - DVU0518 0.27 -0.0 592,231 - DVU0518 0.39 +0.0 592,251 + DVU0518 0.43 +0.4 592,281 + DVU0518 0.50 -0.2 592,289 - DVU0518 0.51 -0.7 592,289 - DVU0518 0.51 -0.0 592,289 - DVU0518 0.51 +0.1 592,306 - DVU0518 0.55 -0.3 592,329 + DVU0518 0.60 -0.2 592,334 + DVU0518 0.61 -0.4 592,337 - DVU0518 0.62 -0.0 592,337 - DVU0518 0.62 +1.5 592,342 - DVU0518 0.63 -0.2 592,363 - DVU0518 0.67 +0.8 592,372 + DVU0518 0.69 -0.3 592,376 + DVU0518 0.70 -0.6 592,433 + DVU0518 0.82 -0.6 592,433 + DVU0518 0.82 -0.5 592,539 - -0.0 592,539 - -0.2 592,574 + -0.2 592,639 - +0.1 592,791 - DVU0519 0.13 -0.1 592,847 + DVU0519 0.16 +0.2 592,950 - DVU0519 0.21 -0.1 592,968 + DVU0519 0.22 -2.3
Or see this region's nucleotide sequence