Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0710

Experiment: MoYLS4 with Tetracyclin 0.001mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdctP and DVU0710 are separated by 982 nucleotidesDVU0710 and DVU0711 are separated by 83 nucleotides DVU0707: dctP - TRAP dicarboxylate family transporter (TIGR), at 786,926 to 787,942 dctP DVU0710: DVU0710 - competence protein comM, putative (TIGR), at 788,925 to 790,589 DVU0710 DVU0711: DVU0711 - hypothetical protein (TIGR), at 790,673 to 791,314 DVU0711 Position (kb) 788 789 790 791Strain fitness (log2 ratio) -1 0 1at 788.023 kb on - strandat 788.030 kb on + strandat 788.120 kb on + strandat 788.161 kb on - strandat 788.422 kb on + strandat 788.468 kb on - strandat 788.523 kb on - strandat 788.532 kb on - strandat 788.614 kb on + strandat 788.622 kb on - strandat 788.662 kb on - strandat 788.701 kb on + strandat 788.745 kb on + strandat 788.745 kb on + strandat 788.753 kb on - strandat 788.766 kb on + strandat 788.774 kb on - strandat 788.805 kb on + strandat 788.906 kb on + strandat 788.939 kb on + strandat 788.947 kb on - strandat 788.957 kb on - strandat 788.959 kb on - strandat 788.974 kb on + strandat 788.981 kb on - strandat 789.013 kb on - strandat 789.017 kb on + strandat 789.039 kb on - strandat 789.048 kb on - strandat 789.153 kb on + strand, within DVU0710at 789.154 kb on - strand, within DVU0710at 789.154 kb on - strand, within DVU0710at 789.219 kb on - strand, within DVU0710at 789.366 kb on + strand, within DVU0710at 789.401 kb on + strand, within DVU0710at 789.418 kb on - strand, within DVU0710at 789.471 kb on + strand, within DVU0710at 789.581 kb on + strand, within DVU0710at 789.601 kb on + strand, within DVU0710at 789.614 kb on - strand, within DVU0710at 789.619 kb on - strand, within DVU0710at 789.647 kb on + strand, within DVU0710at 789.655 kb on - strand, within DVU0710at 789.755 kb on + strand, within DVU0710at 789.796 kb on + strand, within DVU0710at 789.796 kb on + strand, within DVU0710at 789.796 kb on + strand, within DVU0710at 789.796 kb on + strand, within DVU0710at 789.804 kb on - strand, within DVU0710at 789.804 kb on - strand, within DVU0710at 789.812 kb on + strand, within DVU0710at 789.812 kb on + strand, within DVU0710at 789.812 kb on + strand, within DVU0710at 789.820 kb on - strand, within DVU0710at 789.820 kb on - strand, within DVU0710at 789.820 kb on - strand, within DVU0710at 789.843 kb on + strand, within DVU0710at 789.869 kb on + strand, within DVU0710at 789.881 kb on + strand, within DVU0710at 789.958 kb on + strand, within DVU0710at 789.963 kb on + strand, within DVU0710at 790.068 kb on + strand, within DVU0710at 790.070 kb on + strand, within DVU0710at 790.070 kb on + strand, within DVU0710at 790.078 kb on - strand, within DVU0710at 790.102 kb on + strand, within DVU0710at 790.102 kb on - strand, within DVU0710at 790.106 kb on + strand, within DVU0710at 790.108 kb on + strand, within DVU0710at 790.140 kb on + strand, within DVU0710at 790.148 kb on - strand, within DVU0710at 790.338 kb on - strand, within DVU0710at 790.406 kb on + strand, within DVU0710at 790.506 kb on + strandat 790.574 kb on - strandat 790.699 kb on - strandat 790.699 kb on - strandat 790.701 kb on - strandat 790.781 kb on - strand, within DVU0711at 790.808 kb on + strand, within DVU0711at 790.808 kb on + strand, within DVU0711at 790.816 kb on - strand, within DVU0711at 790.820 kb on + strand, within DVU0711at 790.855 kb on + strand, within DVU0711at 790.858 kb on - strand, within DVU0711at 790.878 kb on - strand, within DVU0711at 790.938 kb on - strand, within DVU0711at 791.015 kb on + strand, within DVU0711at 791.035 kb on - strand, within DVU0711at 791.035 kb on - strand, within DVU0711at 791.197 kb on - strand, within DVU0711at 791.205 kb on + strand, within DVU0711at 791.260 kb on + strandat 791.316 kb on - strandat 791.321 kb on + strandat 791.327 kb on + strandat 791.332 kb on + strandat 791.354 kb on + strandat 791.359 kb on + strandat 791.359 kb on + strandat 791.359 kb on + strandat 791.367 kb on - strandat 791.367 kb on - strandat 791.422 kb on - strandat 791.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracyclin 0.001mg/mL
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788,023 - -0.1
788,030 + -0.2
788,120 + -1.0
788,161 - -0.6
788,422 + -0.1
788,468 - -0.1
788,523 - -0.1
788,532 - -0.2
788,614 + +0.1
788,622 - -0.0
788,662 - -0.1
788,701 + +0.0
788,745 + -0.3
788,745 + -0.2
788,753 - +0.0
788,766 + -0.3
788,774 - -0.2
788,805 + -0.7
788,906 + +0.6
788,939 + +0.1
788,947 - +0.0
788,957 - -0.5
788,959 - +0.2
788,974 + +0.6
788,981 - +0.1
789,013 - -1.1
789,017 + +0.1
789,039 - -0.4
789,048 - -0.1
789,153 + DVU0710 0.14 -0.3
789,154 - DVU0710 0.14 -0.0
789,154 - DVU0710 0.14 -0.4
789,219 - DVU0710 0.18 -0.4
789,366 + DVU0710 0.26 -0.3
789,401 + DVU0710 0.29 -1.0
789,418 - DVU0710 0.30 -0.2
789,471 + DVU0710 0.33 -0.1
789,581 + DVU0710 0.39 -0.1
789,601 + DVU0710 0.41 -0.3
789,614 - DVU0710 0.41 -0.1
789,619 - DVU0710 0.42 -1.1
789,647 + DVU0710 0.43 -0.7
789,655 - DVU0710 0.44 +0.1
789,755 + DVU0710 0.50 -0.3
789,796 + DVU0710 0.52 +0.0
789,796 + DVU0710 0.52 +0.4
789,796 + DVU0710 0.52 +0.0
789,796 + DVU0710 0.52 -0.6
789,804 - DVU0710 0.53 -1.2
789,804 - DVU0710 0.53 -0.0
789,812 + DVU0710 0.53 -0.0
789,812 + DVU0710 0.53 -0.5
789,812 + DVU0710 0.53 -0.1
789,820 - DVU0710 0.54 -0.6
789,820 - DVU0710 0.54 -0.3
789,820 - DVU0710 0.54 -1.0
789,843 + DVU0710 0.55 +0.3
789,869 + DVU0710 0.57 -0.1
789,881 + DVU0710 0.57 -0.1
789,958 + DVU0710 0.62 +0.1
789,963 + DVU0710 0.62 +0.1
790,068 + DVU0710 0.69 -1.0
790,070 + DVU0710 0.69 +0.5
790,070 + DVU0710 0.69 -0.3
790,078 - DVU0710 0.69 -0.8
790,102 + DVU0710 0.71 +0.0
790,102 - DVU0710 0.71 +0.0
790,106 + DVU0710 0.71 -0.4
790,108 + DVU0710 0.71 -0.0
790,140 + DVU0710 0.73 -0.9
790,148 - DVU0710 0.73 -1.1
790,338 - DVU0710 0.85 -0.4
790,406 + DVU0710 0.89 +0.2
790,506 + +0.1
790,574 - -0.1
790,699 - -0.1
790,699 - -0.2
790,701 - -0.2
790,781 - DVU0711 0.17 -0.4
790,808 + DVU0711 0.21 +0.2
790,808 + DVU0711 0.21 +0.7
790,816 - DVU0711 0.22 -0.0
790,820 + DVU0711 0.23 -0.8
790,855 + DVU0711 0.28 -0.6
790,858 - DVU0711 0.29 -0.2
790,878 - DVU0711 0.32 +0.4
790,938 - DVU0711 0.41 -0.4
791,015 + DVU0711 0.53 -0.7
791,035 - DVU0711 0.56 +0.2
791,035 - DVU0711 0.56 +0.0
791,197 - DVU0711 0.82 +0.2
791,205 + DVU0711 0.83 +0.0
791,260 + -0.1
791,316 - -0.3
791,321 + -0.5
791,327 + +1.0
791,332 + +0.1
791,354 + -1.2
791,359 + -0.1
791,359 + +0.4
791,359 + -0.1
791,367 - +0.4
791,367 - +0.9
791,422 - +0.5
791,464 - +0.6

Or see this region's nucleotide sequence