Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1987

Experiment: MoYLS4 with Chloramphenicol 0.005mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with Chloramphenicol 0.005mg/mL
2,064,165	-				-0.0
2,064,169	+				+0.2
2,064,177	-				+0.2
2,064,254	-				-0.1
2,064,269	+				-1.1
2,064,269	+				-0.1
2,064,277	-				+0.1
2,064,277	-				-0.0
2,064,289	-				-1.0
2,064,311	-				-0.3
2,064,455	-				+0.1
2,064,493	+				-0.1
2,064,493	+				-0.7
2,064,493	+				-0.1
2,064,493	+				-0.3
2,064,501	-				+0.2
2,064,501	-				-0.1
2,064,523	-				-0.5
2,064,593	+		DVU1986	0.15	-0.1
2,064,765	+		DVU1986	0.55	-0.2
2,064,786	+		DVU1986	0.59	+0.4
2,064,826	+		DVU1986	0.69	-0.4
2,064,834	-		DVU1986	0.71	-0.0
2,064,861	-		DVU1986	0.77	+0.1
2,064,894	+		DVU1986	0.84	-0.2
2,064,916	-		DVU1986	0.90	+0.7
2,065,106	+				+0.6
2,065,158	+				-1.4
2,065,327	-				+0.5
2,065,512	+	uvrA	DVU1987	0.13	+0.0
2,065,513	+	uvrA	DVU1987	0.13	-0.2
2,065,546	+	uvrA	DVU1987	0.14	+0.1
2,065,546	+	uvrA	DVU1987	0.14	+0.3
2,065,546	+	uvrA	DVU1987	0.14	-0.2
2,065,546	+	uvrA	DVU1987	0.14	+0.2
2,065,554	-	uvrA	DVU1987	0.14	-0.2
2,065,554	-	uvrA	DVU1987	0.14	-0.3
2,065,554	-	uvrA	DVU1987	0.14	-0.4
2,065,569	+	uvrA	DVU1987	0.15	-0.7
2,065,628	+	uvrA	DVU1987	0.17	-0.2
2,065,636	-	uvrA	DVU1987	0.17	+0.2
2,065,748	+	uvrA	DVU1987	0.21	-0.3
2,065,806	-	uvrA	DVU1987	0.23	-0.2
2,065,878	+	uvrA	DVU1987	0.26	-0.2
2,065,943	-	uvrA	DVU1987	0.28	+0.5
2,065,943	-	uvrA	DVU1987	0.28	+0.7
2,066,007	+	uvrA	DVU1987	0.30	-0.2
2,066,064	+	uvrA	DVU1987	0.32	+0.4
2,066,151	+	uvrA	DVU1987	0.35	+0.0
2,066,223	+	uvrA	DVU1987	0.38	-0.5
2,066,231	-	uvrA	DVU1987	0.38	+1.1
2,066,241	-	uvrA	DVU1987	0.38	-0.5
2,066,360	-	uvrA	DVU1987	0.43	+0.1
2,066,456	-	uvrA	DVU1987	0.46	-0.6
2,066,489	+	uvrA	DVU1987	0.47	-0.3
2,066,494	+	uvrA	DVU1987	0.47	-0.1
2,066,576	+	uvrA	DVU1987	0.50	-0.1
2,066,576	+	uvrA	DVU1987	0.50	-0.2
2,066,597	+	uvrA	DVU1987	0.51	-0.1
2,066,606	-	uvrA	DVU1987	0.51	+0.6
2,066,739	-	uvrA	DVU1987	0.56	+0.2
2,066,751	+	uvrA	DVU1987	0.56	-0.1
2,066,751	+	uvrA	DVU1987	0.56	+0.1
2,066,759	-	uvrA	DVU1987	0.56	-0.0
2,066,759	-	uvrA	DVU1987	0.56	-0.5
2,066,759	-	uvrA	DVU1987	0.56	-0.1
2,066,838	-	uvrA	DVU1987	0.59	-0.2
2,066,898	-	uvrA	DVU1987	0.61	+0.1
2,066,985	-	uvrA	DVU1987	0.64	+0.1
2,067,107	-	uvrA	DVU1987	0.69	-1.4
2,067,142	-	uvrA	DVU1987	0.70	+0.2
2,067,166	+	uvrA	DVU1987	0.71	+0.8
2,067,166	+	uvrA	DVU1987	0.71	-0.0
2,067,166	+	uvrA	DVU1987	0.71	+0.1
2,067,169	-	uvrA	DVU1987	0.71	-0.5
2,067,174	-	uvrA	DVU1987	0.71	+0.9
2,067,174	-	uvrA	DVU1987	0.71	-0.0
2,067,174	-	uvrA	DVU1987	0.71	-0.1
2,067,174	-	uvrA	DVU1987	0.71	-0.1
2,067,198	+	uvrA	DVU1987	0.72	+0.0
2,067,200	+	uvrA	DVU1987	0.72	+0.2
2,067,321	+	uvrA	DVU1987	0.76	-0.8
2,067,329	-	uvrA	DVU1987	0.76	+0.3
2,067,500	-	uvrA	DVU1987	0.82	-0.1
2,067,518	+	uvrA	DVU1987	0.83	-0.3
2,067,525	+	uvrA	DVU1987	0.83	+0.0
2,067,525	+	uvrA	DVU1987	0.83	-0.2
2,067,527	+	uvrA	DVU1987	0.83	-0.6
2,067,527	+	uvrA	DVU1987	0.83	+0.3
2,067,570	+	uvrA	DVU1987	0.85	-0.2
2,067,738	-				+0.1
2,067,904	+				-0.2
2,067,957	+				-0.1
2,067,973	+				-0.7
2,068,100	-				-0.8
2,068,132	+				-0.8
2,068,140	-				-0.8
2,068,145	+				-0.3
2,068,145	+				+0.2
2,068,158	-				+0.2
2,068,257	+		DVU1988	0.20	+0.1
2,068,268	+		DVU1988	0.22	-1.3
2,068,268	+		DVU1988	0.22	-0.4
2,068,366	-		DVU1988	0.36	+0.4
2,068,391	+		DVU1988	0.40	+0.1
2,068,407	+		DVU1988	0.42	-0.2
2,068,474	+		DVU1988	0.52	+0.0
2,068,482	-		DVU1988	0.53	-0.2
2,068,487	+		DVU1988	0.54	-0.1
2,068,487	+		DVU1988	0.54	+0.3
2,068,735	+				-0.5
2,068,780	-				-0.1
2,068,892	+				-0.1
2,068,892	+				-0.3
2,068,900	-				-0.4
2,068,962	+				-0.8
2,068,970	-				+0.0
2,068,978	-				+0.0
2,068,997	+				-1.2