Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119660 and HMPREF1058_RS10295 are separated by 180 nucleotides HMPREF1058_RS10295 and HMPREF1058_RS10290 overlap by 4 nucleotides HMPREF1058_RS10290 and HMPREF1058_RS10285 overlap by 4 nucleotides HMPREF1058_RS10285 and HMPREF1058_RS10275 are separated by 309 nucleotides
HMPREF1058_RS0119660: HMPREF1058_RS0119660 - DNA cytosine methyltransferase, at 693,868 to 694,671
_RS0119660
HMPREF1058_RS10295: HMPREF1058_RS10295 - hypothetical protein, at 694,852 to 695,319
_RS10295
HMPREF1058_RS10290: HMPREF1058_RS10290 - hypothetical protein, at 695,316 to 695,621
_RS10290
HMPREF1058_RS10285: HMPREF1058_RS10285 - hypothetical protein, at 695,618 to 695,902
_RS10285
HMPREF1058_RS10275: HMPREF1058_RS10275 - RNA-splicing ligase RtcB, at 696,212 to 697,399
_RS10275
Position (kb) 694
695
696 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 694.019 kb on + strand, within HMPREF1058_RS0119660 at 694.022 kb on + strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.038 kb on - strand, within HMPREF1058_RS0119660 at 694.080 kb on - strand, within HMPREF1058_RS0119660 at 694.084 kb on + strand, within HMPREF1058_RS0119660 at 694.085 kb on - strand, within HMPREF1058_RS0119660 at 694.089 kb on + strand, within HMPREF1058_RS0119660 at 694.100 kb on - strand, within HMPREF1058_RS0119660 at 694.127 kb on - strand, within HMPREF1058_RS0119660 at 694.204 kb on - strand, within HMPREF1058_RS0119660 at 694.214 kb on + strand, within HMPREF1058_RS0119660 at 694.236 kb on - strand, within HMPREF1058_RS0119660 at 694.240 kb on - strand, within HMPREF1058_RS0119660 at 694.254 kb on - strand, within HMPREF1058_RS0119660 at 694.261 kb on + strand, within HMPREF1058_RS0119660 at 694.262 kb on - strand, within HMPREF1058_RS0119660 at 694.263 kb on + strand, within HMPREF1058_RS0119660 at 694.264 kb on - strand, within HMPREF1058_RS0119660 at 694.265 kb on + strand, within HMPREF1058_RS0119660 at 694.265 kb on + strand, within HMPREF1058_RS0119660 at 694.266 kb on - strand, within HMPREF1058_RS0119660 at 694.291 kb on - strand, within HMPREF1058_RS0119660 at 694.295 kb on + strand, within HMPREF1058_RS0119660 at 694.295 kb on + strand, within HMPREF1058_RS0119660 at 694.295 kb on + strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.330 kb on + strand, within HMPREF1058_RS0119660 at 694.379 kb on + strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.464 kb on + strand, within HMPREF1058_RS0119660 at 694.537 kb on - strand, within HMPREF1058_RS0119660 at 694.537 kb on - strand, within HMPREF1058_RS0119660 at 694.540 kb on - strand, within HMPREF1058_RS0119660 at 694.588 kb on + strand, within HMPREF1058_RS0119660 at 694.588 kb on + strand, within HMPREF1058_RS0119660 at 694.589 kb on - strand, within HMPREF1058_RS0119660 at 694.600 kb on - strand at 694.600 kb on - strand at 694.642 kb on - strand at 694.646 kb on - strand at 694.668 kb on - strand at 694.682 kb on + strand at 694.683 kb on - strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.745 kb on + strand at 694.847 kb on - strand at 694.848 kb on + strand at 694.849 kb on - strand at 694.849 kb on - strand at 694.892 kb on + strand at 694.902 kb on + strand, within HMPREF1058_RS10295 at 694.977 kb on + strand, within HMPREF1058_RS10295 at 695.166 kb on - strand, within HMPREF1058_RS10295 at 695.371 kb on + strand, within HMPREF1058_RS10290 at 695.395 kb on + strand, within HMPREF1058_RS10290 at 695.517 kb on + strand, within HMPREF1058_RS10290 at 695.517 kb on + strand, within HMPREF1058_RS10290 at 695.537 kb on + strand, within HMPREF1058_RS10290 at 695.537 kb on + strand, within HMPREF1058_RS10290 at 695.538 kb on - strand, within HMPREF1058_RS10290 at 695.547 kb on - strand, within HMPREF1058_RS10290 at 695.606 kb on + strand at 695.617 kb on + strand at 695.625 kb on - strand at 695.658 kb on + strand, within HMPREF1058_RS10285 at 695.663 kb on - strand, within HMPREF1058_RS10285 at 695.691 kb on + strand, within HMPREF1058_RS10285 at 695.767 kb on - strand, within HMPREF1058_RS10285 at 695.848 kb on - strand, within HMPREF1058_RS10285 at 695.858 kb on + strand, within HMPREF1058_RS10285 at 695.858 kb on + strand, within HMPREF1058_RS10285 at 695.859 kb on - strand, within HMPREF1058_RS10285 at 695.883 kb on + strand at 695.907 kb on - strand at 695.912 kb on + strand at 695.912 kb on + strand at 695.922 kb on + strand at 695.923 kb on - strand at 695.923 kb on - strand at 695.926 kb on + strand at 695.927 kb on - strand at 695.928 kb on + strand at 695.929 kb on - strand at 695.957 kb on - strand at 696.002 kb on + strand at 696.002 kb on + strand at 696.053 kb on + strand at 696.054 kb on - strand at 696.085 kb on + strand at 696.111 kb on + strand at 696.111 kb on + strand at 696.112 kb on - strand at 696.199 kb on - strand at 696.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day3 remove 694,019 + HMPREF1058_RS0119660 0.19 -3.0 694,022 + HMPREF1058_RS0119660 0.19 -2.2 694,023 - HMPREF1058_RS0119660 0.19 -0.0 694,023 - HMPREF1058_RS0119660 0.19 -0.4 694,023 - HMPREF1058_RS0119660 0.19 -0.5 694,023 - HMPREF1058_RS0119660 0.19 +0.6 694,038 - HMPREF1058_RS0119660 0.21 -1.7 694,080 - HMPREF1058_RS0119660 0.26 -1.2 694,084 + HMPREF1058_RS0119660 0.27 -2.7 694,085 - HMPREF1058_RS0119660 0.27 +0.3 694,089 + HMPREF1058_RS0119660 0.27 -3.0 694,100 - HMPREF1058_RS0119660 0.29 -0.7 694,127 - HMPREF1058_RS0119660 0.32 -0.2 694,204 - HMPREF1058_RS0119660 0.42 +0.1 694,214 + HMPREF1058_RS0119660 0.43 -1.7 694,236 - HMPREF1058_RS0119660 0.46 -0.2 694,240 - HMPREF1058_RS0119660 0.46 +0.4 694,254 - HMPREF1058_RS0119660 0.48 +0.0 694,261 + HMPREF1058_RS0119660 0.49 -3.0 694,262 - HMPREF1058_RS0119660 0.49 +0.1 694,263 + HMPREF1058_RS0119660 0.49 -1.2 694,264 - HMPREF1058_RS0119660 0.49 +0.2 694,265 + HMPREF1058_RS0119660 0.49 -3.0 694,265 + HMPREF1058_RS0119660 0.49 -2.6 694,266 - HMPREF1058_RS0119660 0.50 +0.2 694,291 - HMPREF1058_RS0119660 0.53 +1.2 694,295 + HMPREF1058_RS0119660 0.53 -1.2 694,295 + HMPREF1058_RS0119660 0.53 -1.2 694,295 + HMPREF1058_RS0119660 0.53 -3.1 694,296 - HMPREF1058_RS0119660 0.53 -0.0 694,296 - HMPREF1058_RS0119660 0.53 -0.2 694,296 - HMPREF1058_RS0119660 0.53 +0.2 694,296 - HMPREF1058_RS0119660 0.53 +0.4 694,298 - HMPREF1058_RS0119660 0.53 -0.5 694,298 - HMPREF1058_RS0119660 0.53 +0.5 694,298 - HMPREF1058_RS0119660 0.53 +0.3 694,298 - HMPREF1058_RS0119660 0.53 +0.8 694,298 - HMPREF1058_RS0119660 0.53 +0.3 694,330 + HMPREF1058_RS0119660 0.57 -1.7 694,379 + HMPREF1058_RS0119660 0.64 -1.7 694,380 - HMPREF1058_RS0119660 0.64 -0.3 694,380 - HMPREF1058_RS0119660 0.64 -0.1 694,380 - HMPREF1058_RS0119660 0.64 +0.5 694,464 + HMPREF1058_RS0119660 0.74 -3.1 694,537 - HMPREF1058_RS0119660 0.83 -0.2 694,537 - HMPREF1058_RS0119660 0.83 +0.1 694,540 - HMPREF1058_RS0119660 0.84 +0.1 694,588 + HMPREF1058_RS0119660 0.90 -1.7 694,588 + HMPREF1058_RS0119660 0.90 -2.2 694,589 - HMPREF1058_RS0119660 0.90 -0.2 694,600 - +0.3 694,600 - +0.8 694,642 - +1.4 694,646 - +0.6 694,668 - +0.1 694,682 + -4.3 694,683 - -0.7 694,725 - -0.3 694,725 - -0.1 694,745 + -5.0 694,847 - -0.7 694,848 + -4.5 694,849 - -1.1 694,849 - +0.7 694,892 + -2.7 694,902 + HMPREF1058_RS10295 0.11 -3.7 694,977 + HMPREF1058_RS10295 0.27 -3.3 695,166 - HMPREF1058_RS10295 0.67 -0.7 695,371 + HMPREF1058_RS10290 0.18 -1.5 695,395 + HMPREF1058_RS10290 0.26 -2.8 695,517 + HMPREF1058_RS10290 0.66 -3.9 695,517 + HMPREF1058_RS10290 0.66 -2.5 695,537 + HMPREF1058_RS10290 0.72 -5.8 695,537 + HMPREF1058_RS10290 0.72 -2.9 695,538 - HMPREF1058_RS10290 0.73 +0.7 695,547 - HMPREF1058_RS10290 0.75 -1.0 695,606 + -3.5 695,617 + -3.8 695,625 - -0.2 695,658 + HMPREF1058_RS10285 0.14 -3.5 695,663 - HMPREF1058_RS10285 0.16 +0.2 695,691 + HMPREF1058_RS10285 0.26 -2.9 695,767 - HMPREF1058_RS10285 0.52 -0.3 695,848 - HMPREF1058_RS10285 0.81 -0.5 695,858 + HMPREF1058_RS10285 0.84 -2.7 695,858 + HMPREF1058_RS10285 0.84 -3.8 695,859 - HMPREF1058_RS10285 0.85 +0.6 695,883 + -5.2 695,907 - -0.6 695,912 + -3.0 695,912 + -3.5 695,922 + -2.0 695,923 - +0.1 695,923 - +0.2 695,926 + -1.7 695,927 - -0.0 695,928 + -3.5 695,929 - +0.2 695,957 - +0.4 696,002 + -4.5 696,002 + -2.5 696,053 + -2.2 696,054 - -1.3 696,085 + -3.2 696,111 + -3.6 696,111 + -3.6 696,112 - +0.3 696,199 - -3.2 696,305 - -2.2
Or see this region's nucleotide sequence