Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1424

Experiment: MoYLS4 with nitrite 0.125mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with nitrite 0.125mg/mL
1,497,034	-	lpdA	DVU1423	0.35	+0.5
1,497,041	+	lpdA	DVU1423	0.35	-0.8
1,497,087	+	lpdA	DVU1423	0.39	-1.0
1,497,095	-	lpdA	DVU1423	0.39	-1.2
1,497,176	-	lpdA	DVU1423	0.45	-0.4
1,497,298	-	lpdA	DVU1423	0.54	+0.3
1,497,298	-	lpdA	DVU1423	0.54	-0.7
1,497,319	+	lpdA	DVU1423	0.56	-1.7
1,497,383	-	lpdA	DVU1423	0.60	-1.9
1,497,451	+	lpdA	DVU1423	0.65	+0.0
1,497,562	-	lpdA	DVU1423	0.73	-0.9
1,497,617	-	lpdA	DVU1423	0.77	-1.0
1,497,651	-	lpdA	DVU1423	0.80	-0.1
1,497,847	+				-0.1
1,497,922	+				+0.1
1,497,934	+				+0.6
1,497,942	-				-0.1
1,497,946	+				-0.0
1,497,973	+				-0.3
1,497,979	-				+0.1
1,497,981	-				-0.0
1,497,981	-				-0.0
1,497,986	-				+0.7
1,498,058	+				-0.1
1,498,304	-	gcvPB	DVU1424	0.27	-0.5
1,498,333	-	gcvPB	DVU1424	0.29	-0.3
1,498,333	-	gcvPB	DVU1424	0.29	+0.2
1,498,341	-	gcvPB	DVU1424	0.29	-0.7
1,498,361	-	gcvPB	DVU1424	0.31	+0.4
1,498,425	-	gcvPB	DVU1424	0.35	+0.1
1,498,491	-	gcvPB	DVU1424	0.40	-0.4
1,498,507	+	gcvPB	DVU1424	0.41	-0.0
1,498,510	-	gcvPB	DVU1424	0.41	-0.3
1,498,538	+	gcvPB	DVU1424	0.43	-0.0
1,498,565	-	gcvPB	DVU1424	0.45	-0.0
1,498,571	+	gcvPB	DVU1424	0.45	-0.2
1,498,631	-	gcvPB	DVU1424	0.49	+0.5
1,498,657	-	gcvPB	DVU1424	0.51	-0.1
1,498,708	+	gcvPB	DVU1424	0.55	-0.5
1,498,727	+	gcvPB	DVU1424	0.56	+0.8
1,498,738	-	gcvPB	DVU1424	0.57	-0.2
1,498,757	+	gcvPB	DVU1424	0.58	-0.1
1,498,772	-	gcvPB	DVU1424	0.59	-0.9
1,498,886	-	gcvPB	DVU1424	0.67	-0.3
1,498,904	-	gcvPB	DVU1424	0.68	-0.1
1,498,904	-	gcvPB	DVU1424	0.68	+0.1
1,498,904	-	gcvPB	DVU1424	0.68	+0.2
1,498,969	+	gcvPB	DVU1424	0.73	+1.9
1,499,034	-	gcvPB	DVU1424	0.77	+0.5
1,499,040	+	gcvPB	DVU1424	0.78	+0.1
1,499,058	+	gcvPB	DVU1424	0.79	-0.1
1,499,058	+	gcvPB	DVU1424	0.79	-0.9
1,499,058	+	gcvPB	DVU1424	0.79	-1.5
1,499,058	+	gcvPB	DVU1424	0.79	+0.1
1,499,058	+	gcvPB	DVU1424	0.79	-0.0
1,499,058	+	gcvPB	DVU1424	0.79	+0.4
1,499,058	+	gcvPB	DVU1424	0.79	+0.9
1,499,058	+	gcvPB	DVU1424	0.79	+0.1
1,499,058	+	gcvPB	DVU1424	0.79	-0.3
1,499,058	+	gcvPB	DVU1424	0.79	+0.1
1,499,066	-	gcvPB	DVU1424	0.79	+0.1
1,499,066	-	gcvPB	DVU1424	0.79	-1.0
1,499,066	-	gcvPB	DVU1424	0.79	+0.1
1,499,066	-	gcvPB	DVU1424	0.79	+0.1
1,499,066	-	gcvPB	DVU1424	0.79	-0.9
1,499,066	-	gcvPB	DVU1424	0.79	+0.1
1,499,066	-	gcvPB	DVU1424	0.79	-0.9
1,499,066	-	gcvPB	DVU1424	0.79	+0.2
1,499,261	-				-0.8
1,499,269	-				-0.4
1,499,315	-				+0.8
1,499,398	-				-0.1
1,499,428	-				-0.6
1,499,506	+	gcvPA	DVU1425	0.11	-0.1
1,499,514	-	gcvPA	DVU1425	0.12	+0.2
1,499,514	-	gcvPA	DVU1425	0.12	+0.1
1,499,569	+	gcvPA	DVU1425	0.16	-0.6
1,499,585	-	gcvPA	DVU1425	0.17	+0.3
1,499,595	-	gcvPA	DVU1425	0.18	+0.1
1,499,635	+	gcvPA	DVU1425	0.21	+0.5
1,499,666	-	gcvPA	DVU1425	0.23	-0.0
1,499,707	+	gcvPA	DVU1425	0.26	-0.6
1,499,712	+	gcvPA	DVU1425	0.27	+1.2
1,499,778	+	gcvPA	DVU1425	0.31	-0.7
1,499,798	+	gcvPA	DVU1425	0.33	-0.1
1,500,030	+	gcvPA	DVU1425	0.50	+0.1
1,500,078	-	gcvPA	DVU1425	0.54	-0.7
1,500,265	+	gcvPA	DVU1425	0.68	-0.3
1,500,327	-	gcvPA	DVU1425	0.73	-0.1
1,500,345	-	gcvPA	DVU1425	0.74	+0.3