Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1116

Experiment: MoYLS4 with nitrite 0.125mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with nitrite 0.125mg/mL
1,219,445	+		DVU1114	0.37	-1.0
1,219,445	-		DVU1114	0.37	-2.6
1,219,508	-		DVU1114	0.52	+0.3
1,219,536	-		DVU1114	0.58	+0.1
1,219,536	-		DVU1114	0.58	+0.1
1,219,578	+		DVU1114	0.68	+0.6
1,219,659	-		DVU1114	0.86	+0.0
1,219,678	+				+0.1
1,219,686	-				-1.2
1,219,686	-				-1.1
1,219,761	+				-0.4
1,219,774	-		DVU1115	0.12	-0.2
1,219,905	+		DVU1115	0.43	+0.0
1,219,911	-		DVU1115	0.44	-1.2
1,219,930	+		DVU1115	0.49	-0.9
1,219,964	+		DVU1115	0.56	+0.2
1,219,964	+		DVU1115	0.56	+0.3
1,220,145	+				+0.6
1,220,448	+				+0.2
1,220,484	+				-0.9
1,220,484	+				+0.3
1,220,484	+				-2.1
1,220,484	+				+0.4
1,220,492	-				-0.1
1,220,492	-				-0.4
1,220,492	-				+0.1
1,220,492	-				+0.4
1,220,492	-				-1.3
1,220,549	-		DVU1116	0.12	-0.0
1,220,549	-		DVU1116	0.12	+0.1
1,220,551	+		DVU1116	0.12	+0.0
1,220,591	+		DVU1116	0.16	+1.1
1,220,591	+		DVU1116	0.16	+0.4
1,220,591	+		DVU1116	0.16	+0.1
1,220,599	-		DVU1116	0.17	-1.3
1,220,600	-		DVU1116	0.17	+0.2
1,220,613	+		DVU1116	0.18	+0.3
1,220,693	+		DVU1116	0.26	+0.2
1,220,707	-		DVU1116	0.28	+0.7
1,220,805	+		DVU1116	0.37	+0.2
1,220,877	+		DVU1116	0.45	+0.2
1,220,877	+		DVU1116	0.45	+0.2
1,220,877	+		DVU1116	0.45	+0.2
1,220,930	-		DVU1116	0.50	+0.2
1,220,935	-		DVU1116	0.51	+0.1
1,220,954	+		DVU1116	0.52	-0.2
1,220,954	+		DVU1116	0.52	-0.3
1,221,021	+		DVU1116	0.59	+0.2
1,221,021	+		DVU1116	0.59	-0.4
1,221,021	+		DVU1116	0.59	-0.3
1,221,021	+		DVU1116	0.59	+0.4
1,221,021	+		DVU1116	0.59	+0.3
1,221,023	+		DVU1116	0.59	+0.1
1,221,029	-		DVU1116	0.60	+0.0
1,221,029	-		DVU1116	0.60	-0.4
1,221,029	-		DVU1116	0.60	+0.1
1,221,029	-		DVU1116	0.60	-0.2
1,221,029	-		DVU1116	0.60	+0.1
1,221,031	-		DVU1116	0.60	+1.2
1,221,039	+		DVU1116	0.61	-1.0
1,221,191	-		DVU1116	0.76	+0.3
1,221,311	-		DVU1116	0.88	-0.6
1,221,359	-				-0.0
1,221,374	-				+0.2
1,221,392	-				-0.2
1,221,431	+				-0.4
1,221,433	+				-0.7
1,221,436	-				-0.6
1,221,439	-				-0.1
1,221,503	+		DVU1117	0.19	-0.1
1,221,533	-		DVU1117	0.28	-0.2
1,221,626	+		DVU1117	0.55	-0.1
1,221,626	+		DVU1117	0.55	-0.8
1,221,634	-		DVU1117	0.57	-0.2
1,221,634	-		DVU1117	0.57	-0.1
1,221,634	-		DVU1117	0.57	+0.2
1,221,634	-		DVU1117	0.57	-0.6
1,221,741	+		DVU1117	0.88	-0.3
1,221,815	+				+0.1
1,221,895	-		DVU1118	0.10	-0.1
1,221,903	+		DVU1118	0.11	-3.5
1,221,993	+		DVU1118	0.20	-0.3
1,222,001	-		DVU1118	0.21	-0.1
1,222,004	+		DVU1118	0.22	-0.1
1,222,004	+		DVU1118	0.22	+0.3
1,222,011	-		DVU1118	0.22	-0.1
1,222,012	-		DVU1118	0.22	-1.0
1,222,022	-		DVU1118	0.23	+0.5
1,222,024	+		DVU1118	0.24	-0.3
1,222,043	-		DVU1118	0.26	-0.2
1,222,058	+		DVU1118	0.27	+0.5
1,222,091	+		DVU1118	0.31	-0.0
1,222,091	+		DVU1118	0.31	-0.5
1,222,099	-		DVU1118	0.32	+0.1
1,222,099	-		DVU1118	0.32	-1.0
1,222,099	-		DVU1118	0.32	+0.1
1,222,115	+		DVU1118	0.33	-1.7
1,222,123	-		DVU1118	0.34	-1.6
1,222,149	+		DVU1118	0.37	-0.1
1,222,157	-		DVU1118	0.38	-0.1
1,222,241	-		DVU1118	0.46	-0.2
1,222,403	+		DVU1118	0.64	+0.0
1,222,411	-		DVU1118	0.64	-0.7
1,222,411	-		DVU1118	0.64	-0.3
1,222,416	-		DVU1118	0.65	+0.2
1,222,421	-		DVU1118	0.65	-0.3