Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03100 and HMPREF1058_RS03095 are separated by 73 nucleotides HMPREF1058_RS03095 and HMPREF1058_RS03090 are separated by 381 nucleotides HMPREF1058_RS03090 and HMPREF1058_RS03085 are separated by 180 nucleotides HMPREF1058_RS03085 and HMPREF1058_RS03080 are separated by 123 nucleotides
HMPREF1058_RS03100: HMPREF1058_RS03100 - LPS export ABC transporter ATP-binding protein, at 11,500 to 12,321
_RS03100
HMPREF1058_RS03095: HMPREF1058_RS03095 - RNA-binding protein, at 12,395 to 12,640
_RS03095
HMPREF1058_RS03090: HMPREF1058_RS03090 - trigger factor, at 13,022 to 14,377
_RS03090
HMPREF1058_RS03085: HMPREF1058_RS03085 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 14,558 to 15,229
_RS03085
HMPREF1058_RS03080: HMPREF1058_RS03080 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 15,353 to 16,603
_RS03080
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 12.317 kb on + strand at 12.339 kb on + strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.388 kb on + strand at 12.389 kb on - strand at 12.392 kb on + strand at 12.393 kb on - strand at 12.396 kb on + strand at 12.397 kb on - strand at 12.404 kb on - strand at 12.523 kb on + strand, within HMPREF1058_RS03095 at 12.559 kb on + strand, within HMPREF1058_RS03095 at 12.560 kb on - strand, within HMPREF1058_RS03095 at 12.612 kb on + strand, within HMPREF1058_RS03095 at 12.617 kb on - strand at 12.631 kb on - strand at 12.691 kb on + strand at 12.703 kb on - strand at 12.732 kb on - strand at 12.752 kb on + strand at 12.780 kb on - strand at 12.781 kb on + strand at 12.782 kb on - strand at 12.890 kb on - strand at 13.000 kb on - strand at 13.012 kb on - strand at 13.028 kb on - strand at 13.105 kb on - strand at 13.142 kb on - strand at 13.226 kb on - strand, within HMPREF1058_RS03090 at 13.255 kb on + strand, within HMPREF1058_RS03090 at 13.277 kb on - strand, within HMPREF1058_RS03090 at 13.381 kb on + strand, within HMPREF1058_RS03090 at 13.418 kb on + strand, within HMPREF1058_RS03090 at 13.418 kb on + strand, within HMPREF1058_RS03090 at 13.419 kb on - strand, within HMPREF1058_RS03090 at 13.421 kb on - strand, within HMPREF1058_RS03090 at 13.487 kb on + strand, within HMPREF1058_RS03090 at 13.488 kb on - strand, within HMPREF1058_RS03090 at 13.492 kb on + strand, within HMPREF1058_RS03090 at 13.493 kb on - strand, within HMPREF1058_RS03090 at 13.493 kb on - strand, within HMPREF1058_RS03090 at 13.498 kb on - strand, within HMPREF1058_RS03090 at 13.505 kb on + strand, within HMPREF1058_RS03090 at 13.506 kb on - strand, within HMPREF1058_RS03090 at 13.506 kb on - strand, within HMPREF1058_RS03090 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.611 kb on - strand, within HMPREF1058_RS03090 at 13.643 kb on - strand, within HMPREF1058_RS03090 at 13.675 kb on + strand, within HMPREF1058_RS03090 at 13.676 kb on - strand, within HMPREF1058_RS03090 at 13.723 kb on - strand, within HMPREF1058_RS03090 at 13.763 kb on - strand, within HMPREF1058_RS03090 at 13.928 kb on - strand at 13.952 kb on + strand, within HMPREF1058_RS03090 at 13.963 kb on + strand, within HMPREF1058_RS03090 at 13.963 kb on + strand, within HMPREF1058_RS03090 at 13.964 kb on - strand, within HMPREF1058_RS03090 at 14.116 kb on + strand, within HMPREF1058_RS03090 at 14.220 kb on + strand, within HMPREF1058_RS03090 at 14.229 kb on - strand, within HMPREF1058_RS03090 at 14.229 kb on - strand, within HMPREF1058_RS03090 at 14.323 kb on + strand at 14.328 kb on + strand at 14.347 kb on + strand at 14.376 kb on - strand at 14.379 kb on - strand at 14.387 kb on - strand at 14.761 kb on + strand, within HMPREF1058_RS03085 at 14.812 kb on + strand, within HMPREF1058_RS03085 at 14.814 kb on + strand, within HMPREF1058_RS03085 at 14.824 kb on + strand, within HMPREF1058_RS03085 at 15.129 kb on + strand, within HMPREF1058_RS03085 at 15.262 kb on - strand at 15.322 kb on + strand at 15.335 kb on + strand at 15.347 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3 remove 12,317 + +0.5 12,339 + +0.5 12,382 - -0.2 12,382 - +0.7 12,388 + +0.7 12,389 - -0.2 12,392 + +0.4 12,393 - +0.4 12,396 + -0.2 12,397 - +0.8 12,404 - -1.3 12,523 + HMPREF1058_RS03095 0.52 +0.3 12,559 + HMPREF1058_RS03095 0.67 +0.6 12,560 - HMPREF1058_RS03095 0.67 -0.3 12,612 + HMPREF1058_RS03095 0.88 +0.4 12,617 - -0.4 12,631 - +0.4 12,691 + -0.2 12,703 - -0.6 12,732 - +0.4 12,752 + +0.4 12,780 - -0.3 12,781 + +0.1 12,782 - +0.5 12,890 - +0.5 13,000 - -2.6 13,012 - -1.6 13,028 - -3.3 13,105 - -2.3 13,142 - -3.2 13,226 - HMPREF1058_RS03090 0.15 -3.4 13,255 + HMPREF1058_RS03090 0.17 -2.1 13,277 - HMPREF1058_RS03090 0.19 -1.6 13,381 + HMPREF1058_RS03090 0.26 -1.5 13,418 + HMPREF1058_RS03090 0.29 -1.0 13,418 + HMPREF1058_RS03090 0.29 -1.9 13,419 - HMPREF1058_RS03090 0.29 -2.6 13,421 - HMPREF1058_RS03090 0.29 -3.2 13,487 + HMPREF1058_RS03090 0.34 -1.9 13,488 - HMPREF1058_RS03090 0.34 -2.3 13,492 + HMPREF1058_RS03090 0.35 -0.8 13,493 - HMPREF1058_RS03090 0.35 -2.3 13,493 - HMPREF1058_RS03090 0.35 -1.8 13,498 - HMPREF1058_RS03090 0.35 -2.6 13,505 + HMPREF1058_RS03090 0.36 -1.6 13,506 - HMPREF1058_RS03090 0.36 -3.5 13,506 - HMPREF1058_RS03090 0.36 -2.8 13,564 + HMPREF1058_RS03090 0.40 -1.2 13,564 + HMPREF1058_RS03090 0.40 -1.3 13,611 - HMPREF1058_RS03090 0.43 -1.7 13,643 - HMPREF1058_RS03090 0.46 -2.7 13,675 + HMPREF1058_RS03090 0.48 -1.8 13,676 - HMPREF1058_RS03090 0.48 -3.0 13,723 - HMPREF1058_RS03090 0.52 -3.5 13,763 - HMPREF1058_RS03090 0.55 -2.6 13,928 - -2.0 13,952 + HMPREF1058_RS03090 0.69 -1.8 13,963 + HMPREF1058_RS03090 0.69 -1.1 13,963 + HMPREF1058_RS03090 0.69 -0.6 13,964 - HMPREF1058_RS03090 0.69 -2.0 14,116 + HMPREF1058_RS03090 0.81 -2.3 14,220 + HMPREF1058_RS03090 0.88 -1.6 14,229 - HMPREF1058_RS03090 0.89 -3.7 14,229 - HMPREF1058_RS03090 0.89 -1.0 14,323 + -1.2 14,328 + -1.3 14,347 + -0.2 14,376 - -0.4 14,379 - -0.7 14,387 - -1.0 14,761 + HMPREF1058_RS03085 0.30 -3.3 14,812 + HMPREF1058_RS03085 0.38 -2.3 14,814 + HMPREF1058_RS03085 0.38 -2.0 14,824 + HMPREF1058_RS03085 0.40 -2.6 15,129 + HMPREF1058_RS03085 0.85 -3.0 15,262 - -0.0 15,322 + +0.3 15,335 + +0.4 15,347 + -2.1
Or see this region's nucleotide sequence