Experiment: MoYLS4 with nitrite 0.125mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0638 and tRNA-Glu are separated by 488 nucleotides tRNA-Glu and pomB are separated by 217 nucleotides pomB and pomA are separated by 3 nucleotides
DVU0638: DVU0638 - membrane protein, putative (TIGR), at 707,913 to 708,779
DVU0638
DVU_tRNA-Glu-2: tRNA-Glu - tRNA with anticodon TTC for Glu (VIMSS-AUTO), at 709,268 to 709,344
tRNA-Glu
DVU0639: pomB - chemotaxis protein PomB (TIGR), at 709,562 to 710,335
pomB
DVU0640: pomA - chemotaxis protein PomA (TIGR), at 710,339 to 711,091
pomA
Position (kb) 709
710 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 708.334 kb on - strand, within DVU0638 at 708.426 kb on + strand, within DVU0638 at 708.449 kb on + strand, within DVU0638 at 708.449 kb on + strand, within DVU0638 at 708.449 kb on + strand, within DVU0638 at 708.449 kb on + strand, within DVU0638 at 708.457 kb on - strand, within DVU0638 at 708.457 kb on - strand, within DVU0638 at 708.457 kb on - strand, within DVU0638 at 708.457 kb on - strand, within DVU0638 at 708.484 kb on + strand, within DVU0638 at 708.492 kb on - strand, within DVU0638 at 708.512 kb on - strand, within DVU0638 at 708.556 kb on - strand, within DVU0638 at 708.742 kb on + strand at 708.924 kb on + strand at 708.934 kb on - strand at 708.951 kb on + strand at 708.959 kb on - strand at 708.987 kb on + strand at 709.001 kb on - strand at 709.131 kb on + strand at 709.133 kb on + strand at 709.141 kb on - strand at 709.141 kb on - strand at 709.141 kb on - strand at 709.141 kb on - strand at 709.144 kb on + strand at 709.166 kb on - strand at 709.441 kb on + strand at 709.442 kb on + strand at 709.453 kb on + strand at 709.560 kb on + strand at 709.708 kb on + strand, within pomB at 709.807 kb on + strand, within pomB at 709.851 kb on - strand, within pomB at 709.924 kb on + strand, within pomB at 710.010 kb on + strand, within pomB at 710.020 kb on + strand, within pomB at 710.134 kb on + strand, within pomB at 710.191 kb on - strand, within pomB at 710.197 kb on - strand, within pomB at 710.225 kb on - strand, within pomB
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrite 0.125mg/mL remove 708,334 - DVU0638 0.49 +0.4 708,426 + DVU0638 0.59 -2.5 708,449 + DVU0638 0.62 -1.1 708,449 + DVU0638 0.62 -0.9 708,449 + DVU0638 0.62 +1.7 708,449 + DVU0638 0.62 -3.0 708,457 - DVU0638 0.63 -1.2 708,457 - DVU0638 0.63 -0.0 708,457 - DVU0638 0.63 -1.6 708,457 - DVU0638 0.63 -1.7 708,484 + DVU0638 0.66 +0.1 708,492 - DVU0638 0.67 +0.0 708,512 - DVU0638 0.69 -0.8 708,556 - DVU0638 0.74 -1.1 708,742 + +0.1 708,924 + +0.3 708,934 - -2.1 708,951 + -0.7 708,959 - -1.6 708,987 + -1.8 709,001 - -0.3 709,131 + +0.2 709,133 + +0.1 709,141 - -0.5 709,141 - +0.5 709,141 - -0.1 709,141 - -0.3 709,144 + -0.1 709,166 - -0.8 709,441 + -0.0 709,442 + -0.8 709,453 + +0.2 709,560 + -0.3 709,708 + pomB DVU0639 0.19 +0.6 709,807 + pomB DVU0639 0.32 +0.6 709,851 - pomB DVU0639 0.37 +1.0 709,924 + pomB DVU0639 0.47 +0.3 710,010 + pomB DVU0639 0.58 +0.3 710,020 + pomB DVU0639 0.59 -0.3 710,134 + pomB DVU0639 0.74 +0.1 710,191 - pomB DVU0639 0.81 +0.2 710,197 - pomB DVU0639 0.82 +0.1 710,225 - pomB DVU0639 0.86 +0.6
Or see this region's nucleotide sequence