Experiment: MoYLS4 with nitrite 0.125mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0638 and tRNA-Glu are separated by 488 nucleotides tRNA-Glu and pomB are separated by 217 nucleotides pomB and pomA are separated by 3 nucleotides pomA and DVU0641 are separated by 0 nucleotides
DVU0638: DVU0638 - membrane protein, putative (TIGR), at 707,913 to 708,779
DVU0638
DVU_tRNA-Glu-2: tRNA-Glu - tRNA with anticodon TTC for Glu (VIMSS-AUTO), at 709,268 to 709,344
tRNA-Glu
DVU0639: pomB - chemotaxis protein PomB (TIGR), at 709,562 to 710,335
pomB
DVU0640: pomA - chemotaxis protein PomA (TIGR), at 710,339 to 711,091
pomA
DVU0641: DVU0641 - conserved hypothetical protein (TIGR), at 711,092 to 712,240
DVU0641
Position (kb) 709
710
711 Strain fitness (log2 ratio) -2
-1
0
1 at 708.742 kb on + strand at 708.924 kb on + strand at 708.934 kb on - strand at 708.951 kb on + strand at 708.959 kb on - strand at 708.987 kb on + strand at 709.001 kb on - strand at 709.131 kb on + strand at 709.133 kb on + strand at 709.141 kb on - strand at 709.141 kb on - strand at 709.141 kb on - strand at 709.141 kb on - strand at 709.144 kb on + strand at 709.166 kb on - strand at 709.441 kb on + strand at 709.442 kb on + strand at 709.453 kb on + strand at 709.560 kb on + strand at 709.708 kb on + strand, within pomB at 709.807 kb on + strand, within pomB at 709.851 kb on - strand, within pomB at 709.924 kb on + strand, within pomB at 710.010 kb on + strand, within pomB at 710.020 kb on + strand, within pomB at 710.134 kb on + strand, within pomB at 710.191 kb on - strand, within pomB at 710.197 kb on - strand, within pomB at 710.225 kb on - strand, within pomB at 710.372 kb on + strand at 710.380 kb on - strand at 710.409 kb on + strand at 710.411 kb on + strand at 710.444 kb on - strand, within pomA at 710.444 kb on - strand, within pomA at 710.444 kb on - strand, within pomA at 710.602 kb on + strand, within pomA at 710.651 kb on + strand, within pomA at 710.678 kb on - strand, within pomA at 710.682 kb on - strand, within pomA at 710.725 kb on - strand, within pomA at 710.732 kb on - strand, within pomA at 710.766 kb on - strand, within pomA at 710.771 kb on - strand, within pomA at 710.869 kb on + strand, within pomA at 710.872 kb on - strand, within pomA at 710.882 kb on - strand, within pomA at 710.914 kb on + strand, within pomA at 710.919 kb on + strand, within pomA at 710.922 kb on - strand, within pomA at 711.222 kb on - strand, within DVU0641
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrite 0.125mg/mL remove 708,742 + +0.1 708,924 + +0.3 708,934 - -2.1 708,951 + -0.7 708,959 - -1.6 708,987 + -1.8 709,001 - -0.3 709,131 + +0.2 709,133 + +0.1 709,141 - -0.5 709,141 - +0.5 709,141 - -0.1 709,141 - -0.3 709,144 + -0.1 709,166 - -0.8 709,441 + -0.0 709,442 + -0.8 709,453 + +0.2 709,560 + -0.3 709,708 + pomB DVU0639 0.19 +0.6 709,807 + pomB DVU0639 0.32 +0.6 709,851 - pomB DVU0639 0.37 +1.0 709,924 + pomB DVU0639 0.47 +0.3 710,010 + pomB DVU0639 0.58 +0.3 710,020 + pomB DVU0639 0.59 -0.3 710,134 + pomB DVU0639 0.74 +0.1 710,191 - pomB DVU0639 0.81 +0.2 710,197 - pomB DVU0639 0.82 +0.1 710,225 - pomB DVU0639 0.86 +0.6 710,372 + -0.1 710,380 - +0.3 710,409 + -1.7 710,411 + +0.2 710,444 - pomA DVU0640 0.14 -0.2 710,444 - pomA DVU0640 0.14 -1.2 710,444 - pomA DVU0640 0.14 +0.4 710,602 + pomA DVU0640 0.35 +0.1 710,651 + pomA DVU0640 0.41 -0.2 710,678 - pomA DVU0640 0.45 +0.2 710,682 - pomA DVU0640 0.46 +0.4 710,725 - pomA DVU0640 0.51 +1.0 710,732 - pomA DVU0640 0.52 +0.5 710,766 - pomA DVU0640 0.57 +1.1 710,771 - pomA DVU0640 0.57 -0.0 710,869 + pomA DVU0640 0.70 +0.0 710,872 - pomA DVU0640 0.71 +0.4 710,882 - pomA DVU0640 0.72 +0.4 710,914 + pomA DVU0640 0.76 -0.2 710,919 + pomA DVU0640 0.77 -0.2 710,922 - pomA DVU0640 0.77 +1.2 711,222 - DVU0641 0.11 -0.1
Or see this region's nucleotide sequence