Experiment: MoYLS4 with nitrite 0.125mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hybA and DVU0589 are separated by 463 nucleotides DVU0589 and DVU0590 are separated by 483 nucleotides DVU0590 and mcpD are separated by 183 nucleotides
DVU0588: hybA - formate dehydrogenase, beta subunit, putative (TIGR), at 656,416 to 657,126
hybA
DVU0589: DVU0589 - molybdopterin-guanine dinucleotide biosynthesis protein B, putative (TIGR), at 657,590 to 658,330
DVU0589
DVU0590: DVU0590 - hypothetical protein (TIGR), at 658,814 to 659,122
DVU0590
DVU0591: mcpD - methyl-accepting chemotaxis protein (TIGR), at 659,306 to 661,264
mcpD
Position (kb) 657
658
659 Strain fitness (log2 ratio) -2
-1
0
1
2 at 656.778 kb on + strand, within hybA at 656.783 kb on + strand, within hybA at 656.848 kb on + strand, within hybA at 656.856 kb on - strand, within hybA at 656.914 kb on + strand, within hybA at 656.964 kb on + strand, within hybA at 656.970 kb on + strand, within hybA at 656.980 kb on + strand, within hybA at 656.980 kb on + strand, within hybA at 656.988 kb on - strand, within hybA at 656.988 kb on - strand, within hybA at 656.991 kb on + strand, within hybA at 656.999 kb on - strand, within hybA at 657.001 kb on - strand, within hybA at 657.128 kb on - strand at 657.128 kb on - strand at 657.128 kb on - strand at 657.289 kb on - strand at 657.319 kb on + strand at 657.327 kb on + strand at 657.327 kb on + strand at 657.327 kb on - strand at 657.335 kb on - strand at 657.335 kb on - strand at 657.370 kb on - strand at 657.427 kb on + strand at 657.473 kb on - strand at 657.480 kb on + strand at 657.485 kb on + strand at 657.493 kb on - strand at 657.587 kb on + strand at 657.600 kb on - strand at 657.702 kb on + strand, within DVU0589 at 657.702 kb on + strand, within DVU0589 at 657.702 kb on + strand, within DVU0589 at 657.702 kb on + strand, within DVU0589 at 657.702 kb on + strand, within DVU0589 at 657.702 kb on + strand, within DVU0589 at 657.710 kb on - strand, within DVU0589 at 657.710 kb on - strand, within DVU0589 at 657.710 kb on - strand, within DVU0589 at 657.710 kb on - strand, within DVU0589 at 657.762 kb on + strand, within DVU0589 at 657.770 kb on - strand, within DVU0589 at 657.770 kb on - strand, within DVU0589 at 657.770 kb on - strand, within DVU0589 at 657.780 kb on - strand, within DVU0589 at 657.873 kb on - strand, within DVU0589 at 657.895 kb on + strand, within DVU0589 at 658.049 kb on - strand, within DVU0589 at 658.078 kb on + strand, within DVU0589 at 658.086 kb on - strand, within DVU0589 at 658.111 kb on + strand, within DVU0589 at 658.129 kb on - strand, within DVU0589 at 658.157 kb on + strand, within DVU0589 at 658.157 kb on + strand, within DVU0589 at 658.174 kb on + strand, within DVU0589 at 658.178 kb on - strand, within DVU0589 at 658.211 kb on + strand, within DVU0589 at 658.217 kb on + strand, within DVU0589 at 658.276 kb on + strand at 658.284 kb on - strand at 658.366 kb on - strand at 658.366 kb on - strand at 658.435 kb on - strand at 658.691 kb on + strand at 658.706 kb on + strand at 658.706 kb on + strand at 658.738 kb on - strand at 658.808 kb on + strand at 658.863 kb on + strand, within DVU0590 at 658.912 kb on - strand, within DVU0590 at 658.912 kb on - strand, within DVU0590 at 658.949 kb on + strand, within DVU0590 at 659.098 kb on + strand at 659.240 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrite 0.125mg/mL remove 656,778 + hybA DVU0588 0.51 +0.8 656,783 + hybA DVU0588 0.52 +0.2 656,848 + hybA DVU0588 0.61 -0.5 656,856 - hybA DVU0588 0.62 -0.7 656,914 + hybA DVU0588 0.70 -0.4 656,964 + hybA DVU0588 0.77 +0.0 656,970 + hybA DVU0588 0.78 +1.1 656,980 + hybA DVU0588 0.79 +0.1 656,980 + hybA DVU0588 0.79 -0.3 656,988 - hybA DVU0588 0.80 -1.0 656,988 - hybA DVU0588 0.80 +0.4 656,991 + hybA DVU0588 0.81 +0.2 656,999 - hybA DVU0588 0.82 -0.8 657,001 - hybA DVU0588 0.82 +0.3 657,128 - -1.1 657,128 - +1.1 657,128 - -1.0 657,289 - +0.2 657,319 + -0.6 657,327 + +0.2 657,327 + -1.6 657,327 - -0.1 657,335 - +0.1 657,335 - +0.1 657,370 - +0.4 657,427 + +0.1 657,473 - -0.1 657,480 + -1.9 657,485 + +0.1 657,493 - +0.8 657,587 + -0.2 657,600 - -0.2 657,702 + DVU0589 0.15 +0.2 657,702 + DVU0589 0.15 -0.6 657,702 + DVU0589 0.15 -2.7 657,702 + DVU0589 0.15 +0.0 657,702 + DVU0589 0.15 -0.5 657,702 + DVU0589 0.15 -0.2 657,710 - DVU0589 0.16 -1.6 657,710 - DVU0589 0.16 -0.6 657,710 - DVU0589 0.16 -0.8 657,710 - DVU0589 0.16 -0.0 657,762 + DVU0589 0.23 -1.5 657,770 - DVU0589 0.24 -0.7 657,770 - DVU0589 0.24 +0.2 657,770 - DVU0589 0.24 -0.4 657,780 - DVU0589 0.26 +0.1 657,873 - DVU0589 0.38 +0.5 657,895 + DVU0589 0.41 -0.4 658,049 - DVU0589 0.62 -1.6 658,078 + DVU0589 0.66 -1.2 658,086 - DVU0589 0.67 +0.2 658,111 + DVU0589 0.70 -0.4 658,129 - DVU0589 0.73 +0.1 658,157 + DVU0589 0.77 -0.4 658,157 + DVU0589 0.77 -1.0 658,174 + DVU0589 0.79 -2.1 658,178 - DVU0589 0.79 -0.3 658,211 + DVU0589 0.84 -0.4 658,217 + DVU0589 0.85 -0.9 658,276 + -0.2 658,284 - +0.7 658,366 - +0.5 658,366 - -1.1 658,435 - +0.7 658,691 + +1.8 658,706 + -0.7 658,706 + -1.2 658,738 - +0.3 658,808 + +0.3 658,863 + DVU0590 0.16 -0.0 658,912 - DVU0590 0.32 -0.3 658,912 - DVU0590 0.32 -1.7 658,949 + DVU0590 0.44 -0.6 659,098 + +0.1 659,240 + +0.5
Or see this region's nucleotide sequence