Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3135

Experiment: MoYLS4 with nitrite 0.125mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with nitrite 0.125mg/mL
3,281,791	+	glpK	DVU3134	0.52	-0.7
3,281,857	-	glpK	DVU3134	0.56	+0.0
3,281,894	+	glpK	DVU3134	0.59	-0.6
3,281,952	-	glpK	DVU3134	0.63	-0.6
3,281,976	+	glpK	DVU3134	0.64	-1.0
3,281,984	-	glpK	DVU3134	0.65	-2.2
3,282,010	-	glpK	DVU3134	0.66	-1.2
3,282,074	+	glpK	DVU3134	0.71	+1.9
3,282,081	-	glpK	DVU3134	0.71	+0.7
3,282,201	+	glpK	DVU3134	0.79	-1.7
3,282,270	+	glpK	DVU3134	0.84	-0.8
3,282,270	+	glpK	DVU3134	0.84	-0.2
3,282,295	+	glpK	DVU3134	0.86	-0.1
3,282,313	-	glpK	DVU3134	0.87	-0.4
3,282,339	+	glpK	DVU3134	0.88	-0.3
3,282,492	+				-0.3
3,282,543	-				-0.3
3,282,599	+				-0.0
3,282,599	+				+0.3
3,282,599	+				-0.0
3,282,609	-				+0.4
3,282,747	+				+0.3
3,282,755	-				-0.3
3,282,813	+				-2.3
3,282,865	+	mdaB	DVU3135	0.15	+0.6
3,282,935	-	mdaB	DVU3135	0.27	+0.1
3,282,943	+	mdaB	DVU3135	0.28	+0.7
3,283,085	+	mdaB	DVU3135	0.51	+0.4
3,283,105	-	mdaB	DVU3135	0.55	-0.7
3,283,131	-	mdaB	DVU3135	0.59	+0.1
3,283,176	+	mdaB	DVU3135	0.66	+0.8
3,283,180	-	mdaB	DVU3135	0.67	+0.4
3,283,181	+	mdaB	DVU3135	0.67	-0.9
3,283,214	+	mdaB	DVU3135	0.72	+0.6
3,283,269	-	mdaB	DVU3135	0.81	+0.3
3,283,420	+				+0.2
3,283,463	-				-0.3
3,283,466	-				-0.4
3,283,511	-		DVU3136	0.11	-0.6
3,283,533	-		DVU3136	0.15	-0.0
3,283,586	+		DVU3136	0.23	-0.4
3,283,608	+		DVU3136	0.26	-0.0
3,283,608	+		DVU3136	0.26	-0.0
3,283,610	+		DVU3136	0.26	+0.7
3,283,616	-		DVU3136	0.27	-0.6
3,283,644	-		DVU3136	0.32	-0.4
3,283,665	-		DVU3136	0.35	+0.1
3,283,680	+		DVU3136	0.37	+0.3
3,283,699	+		DVU3136	0.40	+0.5
3,283,705	-		DVU3136	0.41	-0.3
3,283,709	+		DVU3136	0.41	-0.5
3,283,717	-		DVU3136	0.43	-1.3
3,283,895	+		DVU3136	0.70	-0.1
3,283,955	+		DVU3136	0.79	+0.2
3,284,108	+				-0.1
3,284,178	+				+0.1