Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2088

Experiment: MoYLS4 with nitrite 0.125mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with nitrite 0.125mg/mL
2,177,457	-				+0.0
2,177,493	-				+0.0
2,177,660	+		DVU2087	0.11	-0.5
2,177,672	+		DVU2087	0.12	-0.1
2,177,702	-		DVU2087	0.16	+0.1
2,177,770	+		DVU2087	0.25	-2.5
2,177,783	+		DVU2087	0.26	-0.7
2,177,791	-		DVU2087	0.27	+0.4
2,177,888	+		DVU2087	0.39	-0.2
2,177,921	+		DVU2087	0.43	-0.1
2,177,929	-		DVU2087	0.44	-1.1
2,177,947	+		DVU2087	0.46	+0.3
2,178,115	+		DVU2087	0.67	-0.0
2,178,133	-		DVU2087	0.69	-0.1
2,178,169	+		DVU2087	0.74	+0.5
2,178,237	-		DVU2087	0.82	+0.1
2,178,245	-		DVU2087	0.83	+0.1
2,178,332	-				-0.6
2,178,332	-				-0.2
2,178,352	-				+0.4
2,178,412	-				-0.1
2,178,413	-				-0.4
2,178,556	+		DVU2088	0.19	+1.4
2,178,585	+		DVU2088	0.23	+0.1
2,178,634	-		DVU2088	0.28	-0.2
2,178,674	+		DVU2088	0.32	+0.5
2,178,674	+		DVU2088	0.32	+1.2
2,178,694	+		DVU2088	0.34	+0.5
2,178,859	-		DVU2088	0.52	+0.1
2,178,955	-		DVU2088	0.63	-0.2
2,178,955	-		DVU2088	0.63	-0.4
2,178,957	+		DVU2088	0.63	+0.1
2,178,995	+		DVU2088	0.67	-0.1
2,179,090	+		DVU2088	0.77	+0.3
2,179,092	-		DVU2088	0.78	+0.0
2,179,098	-		DVU2088	0.78	-1.4
2,179,098	-		DVU2088	0.78	+1.7
2,179,148	+		DVU2088	0.84	+0.6
2,179,217	-				-0.7
2,179,272	+				+0.1
2,179,329	+				+0.1
2,179,329	+				-0.2
2,179,351	+				-0.0
2,179,464	+				+0.2
2,179,566	-				+0.3
2,179,586	+				-0.2
2,179,630	-				-0.0
2,179,635	-				+0.4
2,180,033	+		DVU2090	0.56	-2.6
2,180,068	+		DVU2090	0.60	-0.1
2,180,176	-		DVU2090	0.73	+0.1
2,180,198	+		DVU2090	0.75	-0.1
2,180,206	-		DVU2090	0.76	-0.2
2,180,227	+		DVU2090	0.79	-0.1
2,180,227	+		DVU2090	0.79	+0.2
2,180,263	+		DVU2090	0.83	+0.9