Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02340 and HMPREF1058_RS21695 are separated by 229 nucleotides HMPREF1058_RS21695 and HMPREF1058_RS02335 are separated by 365 nucleotides
HMPREF1058_RS02340: HMPREF1058_RS02340 - RNA degradosome polyphosphate kinase, at 221,953 to 224,007
_RS02340
HMPREF1058_RS21695: HMPREF1058_RS21695 - hypothetical protein, at 224,237 to 224,392
_RS21695
HMPREF1058_RS02335: HMPREF1058_RS02335 - hypothetical protein, at 224,758 to 225,186
_RS02335
Position (kb) 224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.310 kb on - strand, within HMPREF1058_RS02340 at 223.310 kb on - strand, within HMPREF1058_RS02340 at 223.311 kb on + strand, within HMPREF1058_RS02340 at 223.386 kb on + strand, within HMPREF1058_RS02340 at 223.405 kb on - strand, within HMPREF1058_RS02340 at 223.405 kb on - strand, within HMPREF1058_RS02340 at 223.405 kb on - strand, within HMPREF1058_RS02340 at 223.514 kb on + strand, within HMPREF1058_RS02340 at 223.515 kb on - strand, within HMPREF1058_RS02340 at 223.597 kb on + strand, within HMPREF1058_RS02340 at 223.635 kb on - strand, within HMPREF1058_RS02340 at 223.675 kb on - strand, within HMPREF1058_RS02340 at 223.735 kb on + strand, within HMPREF1058_RS02340 at 223.860 kb on - strand at 223.863 kb on + strand at 223.863 kb on + strand at 223.863 kb on + strand at 223.864 kb on - strand at 223.881 kb on - strand at 223.970 kb on - strand at 223.970 kb on - strand at 224.024 kb on + strand at 224.111 kb on + strand at 224.217 kb on - strand at 224.217 kb on - strand at 224.260 kb on - strand, within HMPREF1058_RS21695 at 224.260 kb on - strand, within HMPREF1058_RS21695 at 224.287 kb on + strand, within HMPREF1058_RS21695 at 224.326 kb on - strand, within HMPREF1058_RS21695 at 224.513 kb on - strand at 224.772 kb on + strand at 224.962 kb on + strand, within HMPREF1058_RS02335 at 224.963 kb on - strand, within HMPREF1058_RS02335 at 225.110 kb on + strand, within HMPREF1058_RS02335 at 225.159 kb on - strand at 225.162 kb on + strand at 225.162 kb on + strand at 225.162 kb on + strand at 225.163 kb on - strand at 225.186 kb on + strand at 225.205 kb on + strand at 225.206 kb on - strand at 225.249 kb on + strand at 225.294 kb on - strand at 225.303 kb on - strand at 225.303 kb on - strand at 225.312 kb on + strand at 225.314 kb on - strand at 225.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 223,310 - HMPREF1058_RS02340 0.66 +0.2 223,310 - HMPREF1058_RS02340 0.66 +0.1 223,311 + HMPREF1058_RS02340 0.66 +0.1 223,386 + HMPREF1058_RS02340 0.70 -0.6 223,405 - HMPREF1058_RS02340 0.71 +0.4 223,405 - HMPREF1058_RS02340 0.71 +0.5 223,405 - HMPREF1058_RS02340 0.71 -1.4 223,514 + HMPREF1058_RS02340 0.76 +0.7 223,515 - HMPREF1058_RS02340 0.76 +0.7 223,597 + HMPREF1058_RS02340 0.80 -0.3 223,635 - HMPREF1058_RS02340 0.82 +0.2 223,675 - HMPREF1058_RS02340 0.84 +0.9 223,735 + HMPREF1058_RS02340 0.87 -2.0 223,860 - +0.4 223,863 + +0.4 223,863 + -0.7 223,863 + -1.4 223,864 - -0.4 223,881 - -1.6 223,970 - -0.2 223,970 - -1.0 224,024 + +1.0 224,111 + +0.0 224,217 - +0.0 224,217 - -0.0 224,260 - HMPREF1058_RS21695 0.15 +1.8 224,260 - HMPREF1058_RS21695 0.15 +1.3 224,287 + HMPREF1058_RS21695 0.32 -0.0 224,326 - HMPREF1058_RS21695 0.57 -0.7 224,513 - -0.4 224,772 + +0.4 224,962 + HMPREF1058_RS02335 0.48 -0.4 224,963 - HMPREF1058_RS02335 0.48 +1.8 225,110 + HMPREF1058_RS02335 0.82 +0.6 225,159 - -1.2 225,162 + +0.5 225,162 + +1.0 225,162 + +0.6 225,163 - +0.2 225,186 + -0.1 225,205 + -0.5 225,206 - +0.5 225,249 + -0.4 225,294 - +0.0 225,303 - -0.7 225,303 - +0.1 225,312 + -0.2 225,314 - -0.2 225,316 - -0.5
Or see this region's nucleotide sequence