Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10195 and HMPREF1058_RS10190 overlap by 4 nucleotides HMPREF1058_RS10190 and HMPREF1058_RS21620 are separated by 129 nucleotides HMPREF1058_RS21620 and HMPREF1058_RS10185 are separated by 1 nucleotides HMPREF1058_RS10185 and HMPREF1058_RS10180 are separated by 1 nucleotides HMPREF1058_RS10180 and HMPREF1058_RS10175 are separated by 19 nucleotides
HMPREF1058_RS10195: HMPREF1058_RS10195 - 3'-5' exonuclease, at 709,252 to 709,824
_RS10195
HMPREF1058_RS10190: HMPREF1058_RS10190 - ParB/RepB/Spo0J family partition protein, at 709,821 to 710,633
_RS10190
HMPREF1058_RS21620: HMPREF1058_RS21620 - hypothetical protein, at 710,763 to 710,936
_RS21620
HMPREF1058_RS10185: HMPREF1058_RS10185 - hypothetical protein, at 710,938 to 711,393
_RS10185
HMPREF1058_RS10180: HMPREF1058_RS10180 - N-6-adenine-methyltransferase, at 711,395 to 711,883
_RS10180
HMPREF1058_RS10175: HMPREF1058_RS10175 - hypothetical protein, at 711,903 to 712,466
_RS10175
Position (kb) 710
711 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 709.783 kb on + strand at 709.905 kb on + strand, within HMPREF1058_RS10190 at 709.905 kb on + strand, within HMPREF1058_RS10190 at 710.135 kb on + strand, within HMPREF1058_RS10190 at 710.138 kb on + strand, within HMPREF1058_RS10190 at 710.139 kb on - strand, within HMPREF1058_RS10190 at 710.155 kb on - strand, within HMPREF1058_RS10190 at 710.281 kb on + strand, within HMPREF1058_RS10190 at 710.369 kb on + strand, within HMPREF1058_RS10190 at 710.409 kb on - strand, within HMPREF1058_RS10190 at 710.409 kb on - strand at 710.508 kb on - strand, within HMPREF1058_RS10190 at 710.583 kb on - strand at 710.624 kb on + strand at 710.703 kb on + strand at 710.723 kb on - strand at 710.764 kb on + strand at 710.782 kb on + strand, within HMPREF1058_RS21620 at 710.862 kb on + strand, within HMPREF1058_RS21620 at 710.937 kb on - strand at 711.013 kb on + strand, within HMPREF1058_RS10185 at 711.014 kb on - strand, within HMPREF1058_RS10185 at 711.085 kb on + strand, within HMPREF1058_RS10185 at 711.096 kb on - strand, within HMPREF1058_RS10185 at 711.111 kb on + strand, within HMPREF1058_RS10185 at 711.112 kb on - strand, within HMPREF1058_RS10185 at 711.113 kb on + strand, within HMPREF1058_RS10185 at 711.113 kb on + strand, within HMPREF1058_RS10185 at 711.113 kb on + strand, within HMPREF1058_RS10185 at 711.114 kb on - strand, within HMPREF1058_RS10185 at 711.254 kb on - strand, within HMPREF1058_RS10185 at 711.279 kb on + strand, within HMPREF1058_RS10185 at 711.364 kb on + strand at 711.472 kb on + strand, within HMPREF1058_RS10180 at 711.535 kb on + strand, within HMPREF1058_RS10180 at 711.607 kb on + strand, within HMPREF1058_RS10180 at 711.620 kb on + strand, within HMPREF1058_RS10180 at 711.743 kb on + strand, within HMPREF1058_RS10180 at 711.744 kb on - strand at 711.745 kb on + strand, within HMPREF1058_RS10180 at 711.745 kb on + strand, within HMPREF1058_RS10180 at 711.745 kb on + strand, within HMPREF1058_RS10180 at 711.745 kb on + strand, within HMPREF1058_RS10180 at 711.746 kb on - strand, within HMPREF1058_RS10180 at 711.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 709,783 + -0.8 709,905 + HMPREF1058_RS10190 0.10 +1.7 709,905 + HMPREF1058_RS10190 0.10 +0.7 710,135 + HMPREF1058_RS10190 0.39 +0.4 710,138 + HMPREF1058_RS10190 0.39 +0.4 710,139 - HMPREF1058_RS10190 0.39 -0.3 710,155 - HMPREF1058_RS10190 0.41 -0.6 710,281 + HMPREF1058_RS10190 0.57 -0.2 710,369 + HMPREF1058_RS10190 0.67 -0.3 710,409 - HMPREF1058_RS10190 0.72 -1.0 710,409 - -1.7 710,508 - HMPREF1058_RS10190 0.85 -1.0 710,583 - -0.6 710,624 + -0.4 710,703 + -0.3 710,723 - -0.8 710,764 + +0.3 710,782 + HMPREF1058_RS21620 0.11 +0.8 710,862 + HMPREF1058_RS21620 0.57 -0.1 710,937 - -2.1 711,013 + HMPREF1058_RS10185 0.16 -1.1 711,014 - HMPREF1058_RS10185 0.17 -1.9 711,085 + HMPREF1058_RS10185 0.32 +0.0 711,096 - HMPREF1058_RS10185 0.35 -3.1 711,111 + HMPREF1058_RS10185 0.38 +0.1 711,112 - HMPREF1058_RS10185 0.38 -0.5 711,113 + HMPREF1058_RS10185 0.38 -0.0 711,113 + HMPREF1058_RS10185 0.38 +0.2 711,113 + HMPREF1058_RS10185 0.38 +0.1 711,114 - HMPREF1058_RS10185 0.39 -3.9 711,254 - HMPREF1058_RS10185 0.69 -0.9 711,279 + HMPREF1058_RS10185 0.75 +0.4 711,364 + -1.1 711,472 + HMPREF1058_RS10180 0.16 +0.1 711,535 + HMPREF1058_RS10180 0.29 +0.1 711,607 + HMPREF1058_RS10180 0.43 +1.1 711,620 + HMPREF1058_RS10180 0.46 +0.1 711,743 + HMPREF1058_RS10180 0.71 -1.0 711,744 - -1.1 711,745 + HMPREF1058_RS10180 0.72 +2.9 711,745 + HMPREF1058_RS10180 0.72 -1.7 711,745 + HMPREF1058_RS10180 0.72 +0.0 711,745 + HMPREF1058_RS10180 0.72 +0.5 711,746 - HMPREF1058_RS10180 0.72 -1.7 711,746 - -1.7
Or see this region's nucleotide sequence