Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15605 and HMPREF1058_RS21310 are separated by 6 nucleotides HMPREF1058_RS21310 and HMPREF1058_RS15600 are separated by 18 nucleotides HMPREF1058_RS15600 and HMPREF1058_RS15595 are separated by 13 nucleotides
HMPREF1058_RS15605: HMPREF1058_RS15605 - 3-methyl-2-oxobutanoate dehydrogenase subunit VorB, at 876,937 to 878,019
_RS15605
HMPREF1058_RS21310: HMPREF1058_RS21310 - hypothetical protein, at 878,026 to 878,193
_RS21310
HMPREF1058_RS15600: HMPREF1058_RS15600 - 2-oxoglutarate oxidoreductase, at 878,212 to 878,976
_RS15600
HMPREF1058_RS15595: HMPREF1058_RS15595 - 2-oxoacid:acceptor oxidoreductase family protein, at 878,990 to 879,532
_RS15595
Position (kb) 878
879 Strain fitness (log2 ratio) -2
-1
0
1
2 at 877.985 kb on + strand at 878.009 kb on + strand at 878.051 kb on + strand, within HMPREF1058_RS21310 at 878.051 kb on + strand, within HMPREF1058_RS21310 at 878.131 kb on + strand, within HMPREF1058_RS21310 at 878.131 kb on + strand, within HMPREF1058_RS21310 at 878.131 kb on + strand, within HMPREF1058_RS21310 at 878.131 kb on + strand, within HMPREF1058_RS21310 at 878.189 kb on + strand at 878.191 kb on + strand at 878.974 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 877,985 + +0.5 878,009 + +0.2 878,051 + HMPREF1058_RS21310 0.15 +0.1 878,051 + HMPREF1058_RS21310 0.15 +0.3 878,131 + HMPREF1058_RS21310 0.62 +0.4 878,131 + HMPREF1058_RS21310 0.62 -2.3 878,131 + HMPREF1058_RS21310 0.62 +2.7 878,131 + HMPREF1058_RS21310 0.62 +0.5 878,189 + +0.3 878,191 + -0.2 878,974 + +1.8
Or see this region's nucleotide sequence