Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04170 and HMPREF1058_RS21070 are separated by 26 nucleotides HMPREF1058_RS21070 and HMPREF1058_RS04165 are separated by 228 nucleotides
HMPREF1058_RS04170: HMPREF1058_RS04170 - potassium-transporting ATPase subunit KdpA, at 102,556 to 104,262
_RS04170
HMPREF1058_RS21070: HMPREF1058_RS21070 - potassium-transporting ATPase subunit F, at 104,289 to 104,408
_RS21070
HMPREF1058_RS04165: HMPREF1058_RS04165 - O-acetyl-ADP-ribose deacetylase, at 104,637 to 105,263
_RS04165
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.316 kb on - strand, within HMPREF1058_RS04170 at 103.368 kb on + strand, within HMPREF1058_RS04170 at 103.414 kb on - strand, within HMPREF1058_RS04170 at 103.471 kb on + strand, within HMPREF1058_RS04170 at 103.511 kb on + strand, within HMPREF1058_RS04170 at 103.620 kb on - strand, within HMPREF1058_RS04170 at 103.751 kb on + strand, within HMPREF1058_RS04170 at 103.779 kb on + strand, within HMPREF1058_RS04170 at 103.807 kb on - strand, within HMPREF1058_RS04170 at 103.868 kb on - strand, within HMPREF1058_RS04170 at 103.904 kb on + strand, within HMPREF1058_RS04170 at 103.905 kb on - strand, within HMPREF1058_RS04170 at 103.938 kb on + strand, within HMPREF1058_RS04170 at 103.944 kb on + strand, within HMPREF1058_RS04170 at 103.945 kb on - strand, within HMPREF1058_RS04170 at 104.146 kb on - strand at 104.172 kb on + strand at 104.187 kb on + strand at 104.189 kb on + strand at 104.208 kb on + strand at 104.209 kb on - strand at 104.209 kb on - strand at 104.238 kb on + strand at 104.317 kb on + strand, within HMPREF1058_RS21070 at 104.317 kb on + strand, within HMPREF1058_RS21070 at 104.324 kb on + strand, within HMPREF1058_RS21070 at 104.346 kb on - strand, within HMPREF1058_RS21070 at 104.349 kb on + strand, within HMPREF1058_RS21070 at 104.369 kb on + strand, within HMPREF1058_RS21070 at 104.369 kb on + strand, within HMPREF1058_RS21070 at 104.369 kb on + strand, within HMPREF1058_RS21070 at 104.370 kb on - strand, within HMPREF1058_RS21070 at 104.413 kb on + strand at 104.414 kb on - strand at 104.443 kb on + strand at 104.513 kb on + strand at 104.531 kb on + strand at 104.569 kb on + strand at 104.594 kb on + strand at 104.652 kb on + strand at 104.714 kb on + strand, within HMPREF1058_RS04165 at 104.717 kb on - strand, within HMPREF1058_RS04165 at 104.725 kb on - strand, within HMPREF1058_RS04165 at 104.771 kb on - strand, within HMPREF1058_RS04165 at 104.858 kb on - strand, within HMPREF1058_RS04165 at 104.956 kb on - strand, within HMPREF1058_RS04165 at 104.956 kb on - strand, within HMPREF1058_RS04165 at 105.045 kb on + strand, within HMPREF1058_RS04165 at 105.118 kb on + strand, within HMPREF1058_RS04165 at 105.118 kb on + strand, within HMPREF1058_RS04165 at 105.118 kb on + strand, within HMPREF1058_RS04165 at 105.119 kb on - strand, within HMPREF1058_RS04165 at 105.119 kb on - strand, within HMPREF1058_RS04165 at 105.119 kb on - strand, within HMPREF1058_RS04165 at 105.119 kb on - strand, within HMPREF1058_RS04165 at 105.121 kb on - strand, within HMPREF1058_RS04165 at 105.121 kb on - strand, within HMPREF1058_RS04165 at 105.208 kb on + strand at 105.209 kb on - strand at 105.209 kb on - strand at 105.238 kb on + strand at 105.348 kb on + strand at 105.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 103,316 - HMPREF1058_RS04170 0.45 -2.3 103,368 + HMPREF1058_RS04170 0.48 +0.2 103,414 - HMPREF1058_RS04170 0.50 +0.3 103,471 + HMPREF1058_RS04170 0.54 -0.7 103,511 + HMPREF1058_RS04170 0.56 +1.7 103,620 - HMPREF1058_RS04170 0.62 -1.5 103,751 + HMPREF1058_RS04170 0.70 -0.3 103,779 + HMPREF1058_RS04170 0.72 +0.1 103,807 - HMPREF1058_RS04170 0.73 -0.7 103,868 - HMPREF1058_RS04170 0.77 -0.1 103,904 + HMPREF1058_RS04170 0.79 -0.1 103,905 - HMPREF1058_RS04170 0.79 -0.5 103,938 + HMPREF1058_RS04170 0.81 +0.5 103,944 + HMPREF1058_RS04170 0.81 +0.1 103,945 - HMPREF1058_RS04170 0.81 +0.7 104,146 - +0.3 104,172 + +0.5 104,187 + -0.4 104,189 + -1.5 104,208 + +0.7 104,209 - -0.6 104,209 - +0.2 104,238 + +0.7 104,317 + HMPREF1058_RS21070 0.23 -0.2 104,317 + HMPREF1058_RS21070 0.23 +1.2 104,324 + HMPREF1058_RS21070 0.29 +1.2 104,346 - HMPREF1058_RS21070 0.47 -0.2 104,349 + HMPREF1058_RS21070 0.50 +0.4 104,369 + HMPREF1058_RS21070 0.67 -0.9 104,369 + HMPREF1058_RS21070 0.67 +1.9 104,369 + HMPREF1058_RS21070 0.67 +0.1 104,370 - HMPREF1058_RS21070 0.68 -0.3 104,413 + +0.3 104,414 - -3.3 104,443 + +0.6 104,513 + +1.3 104,531 + -0.1 104,569 + +0.4 104,594 + -1.4 104,652 + +0.9 104,714 + HMPREF1058_RS04165 0.12 +0.5 104,717 - HMPREF1058_RS04165 0.13 -0.7 104,725 - HMPREF1058_RS04165 0.14 -0.3 104,771 - HMPREF1058_RS04165 0.21 +0.0 104,858 - HMPREF1058_RS04165 0.35 -0.4 104,956 - HMPREF1058_RS04165 0.51 +0.0 104,956 - HMPREF1058_RS04165 0.51 +0.2 105,045 + HMPREF1058_RS04165 0.65 +1.7 105,118 + HMPREF1058_RS04165 0.77 -2.5 105,118 + HMPREF1058_RS04165 0.77 +0.8 105,118 + HMPREF1058_RS04165 0.77 +0.2 105,119 - HMPREF1058_RS04165 0.77 -0.0 105,119 - HMPREF1058_RS04165 0.77 -0.7 105,119 - HMPREF1058_RS04165 0.77 +0.6 105,119 - HMPREF1058_RS04165 0.77 -0.7 105,121 - HMPREF1058_RS04165 0.77 +0.7 105,121 - HMPREF1058_RS04165 0.77 -0.2 105,208 + -0.2 105,209 - -0.1 105,209 - +0.2 105,238 + -1.1 105,348 + +0.6 105,406 + -2.0
Or see this region's nucleotide sequence