Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17220 and HMPREF1058_RS20440 are separated by 954 nucleotides HMPREF1058_RS20440 and HMPREF1058_RS17215 are separated by 102 nucleotides
HMPREF1058_RS17220: HMPREF1058_RS17220 - ATP-binding protein, at 498,877 to 500,445
_RS17220
HMPREF1058_RS20440: HMPREF1058_RS20440 - hypothetical protein, at 501,400 to 501,606
_RS20440
HMPREF1058_RS17215: HMPREF1058_RS17215 - DEAD/DEAH box helicase, at 501,709 to 504,126
_RS17215
Position (kb) 501
502 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 500.460 kb on + strand at 500.598 kb on - strand at 500.663 kb on + strand at 500.663 kb on + strand at 500.664 kb on - strand at 500.664 kb on - strand at 500.664 kb on - strand at 500.971 kb on + strand at 500.972 kb on - strand at 500.996 kb on - strand at 501.043 kb on + strand at 501.043 kb on + strand at 501.052 kb on - strand at 501.061 kb on + strand at 501.103 kb on + strand at 501.311 kb on + strand at 501.500 kb on + strand, within HMPREF1058_RS20440 at 501.500 kb on + strand, within HMPREF1058_RS20440 at 501.501 kb on - strand, within HMPREF1058_RS20440 at 501.638 kb on - strand at 501.639 kb on + strand at 501.640 kb on - strand at 501.686 kb on - strand at 501.686 kb on - strand at 501.687 kb on + strand at 501.691 kb on - strand at 501.691 kb on - strand at 501.691 kb on - strand at 501.691 kb on - strand at 501.692 kb on + strand at 501.692 kb on + strand at 501.693 kb on - strand at 501.693 kb on - strand at 501.802 kb on + strand at 501.803 kb on - strand at 501.803 kb on - strand at 501.839 kb on - strand at 501.853 kb on + strand at 501.937 kb on + strand at 501.964 kb on + strand, within HMPREF1058_RS17215 at 502.011 kb on + strand, within HMPREF1058_RS17215 at 502.037 kb on + strand, within HMPREF1058_RS17215 at 502.038 kb on - strand, within HMPREF1058_RS17215 at 502.175 kb on + strand, within HMPREF1058_RS17215 at 502.257 kb on - strand, within HMPREF1058_RS17215 at 502.310 kb on + strand, within HMPREF1058_RS17215 at 502.310 kb on + strand, within HMPREF1058_RS17215 at 502.310 kb on + strand, within HMPREF1058_RS17215 at 502.372 kb on - strand, within HMPREF1058_RS17215 at 502.452 kb on - strand, within HMPREF1058_RS17215 at 502.527 kb on - strand, within HMPREF1058_RS17215 at 502.560 kb on - strand, within HMPREF1058_RS17215 at 502.560 kb on - strand, within HMPREF1058_RS17215
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 500,460 + +0.1 500,598 - +0.1 500,663 + -0.3 500,663 + -0.7 500,664 - -0.1 500,664 - -0.6 500,664 - -0.2 500,971 + -0.1 500,972 - +0.5 500,996 - +0.3 501,043 + +0.2 501,043 + -1.9 501,052 - +0.2 501,061 + +1.8 501,103 + +0.2 501,311 + +0.6 501,500 + HMPREF1058_RS20440 0.48 +0.4 501,500 + HMPREF1058_RS20440 0.48 +0.2 501,501 - HMPREF1058_RS20440 0.49 +1.2 501,638 - +0.1 501,639 + +0.2 501,640 - +0.4 501,686 - -0.8 501,686 - -0.9 501,687 + +0.5 501,691 - +0.4 501,691 - -2.0 501,691 - +0.2 501,691 - -0.1 501,692 + -0.3 501,692 + -3.1 501,693 - +0.4 501,693 - +0.5 501,802 + +1.0 501,803 - +0.5 501,803 - -0.0 501,839 - -0.4 501,853 + +2.1 501,937 + -0.7 501,964 + HMPREF1058_RS17215 0.11 -0.5 502,011 + HMPREF1058_RS17215 0.12 -0.2 502,037 + HMPREF1058_RS17215 0.14 -0.3 502,038 - HMPREF1058_RS17215 0.14 -0.2 502,175 + HMPREF1058_RS17215 0.19 +0.1 502,257 - HMPREF1058_RS17215 0.23 +0.6 502,310 + HMPREF1058_RS17215 0.25 +0.5 502,310 + HMPREF1058_RS17215 0.25 +0.2 502,310 + HMPREF1058_RS17215 0.25 +0.8 502,372 - HMPREF1058_RS17215 0.27 +0.3 502,452 - HMPREF1058_RS17215 0.31 +0.2 502,527 - HMPREF1058_RS17215 0.34 +0.6 502,560 - HMPREF1058_RS17215 0.35 +1.1 502,560 - HMPREF1058_RS17215 0.35 -1.6
Or see this region's nucleotide sequence