Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18575 and HMPREF1058_RS18570 overlap by 8 nucleotides HMPREF1058_RS18570 and HMPREF1058_RS18565 overlap by 4 nucleotides HMPREF1058_RS18565 and HMPREF1058_RS18560 are separated by 20 nucleotides HMPREF1058_RS18560 and HMPREF1058_RS18555 are separated by 78 nucleotides
HMPREF1058_RS18575: HMPREF1058_RS18575 - YqgE/AlgH family protein, at 125,080 to 125,670
_RS18575
HMPREF1058_RS18570: HMPREF1058_RS18570 - GNAT family N-acetyltransferase, at 125,663 to 126,199
_RS18570
HMPREF1058_RS18565: HMPREF1058_RS18565 - hypothetical protein, at 126,196 to 126,666
_RS18565
HMPREF1058_RS18560: HMPREF1058_RS18560 - recombination protein RecR, at 126,687 to 127,304
_RS18560
HMPREF1058_RS18555: HMPREF1058_RS18555 - sodium:solute symporter, at 127,383 to 128,864
_RS18555
Position (kb) 126
127 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 125.220 kb on + strand, within HMPREF1058_RS18575 at 125.226 kb on + strand, within HMPREF1058_RS18575 at 125.312 kb on - strand, within HMPREF1058_RS18575 at 125.434 kb on + strand, within HMPREF1058_RS18575 at 125.434 kb on + strand, within HMPREF1058_RS18575 at 125.435 kb on - strand, within HMPREF1058_RS18575 at 125.435 kb on - strand, within HMPREF1058_RS18575 at 125.436 kb on + strand, within HMPREF1058_RS18575 at 125.437 kb on - strand, within HMPREF1058_RS18575 at 125.437 kb on - strand, within HMPREF1058_RS18575 at 125.523 kb on - strand, within HMPREF1058_RS18575 at 125.591 kb on + strand, within HMPREF1058_RS18575 at 125.720 kb on - strand, within HMPREF1058_RS18570 at 125.806 kb on - strand, within HMPREF1058_RS18570 at 125.806 kb on - strand, within HMPREF1058_RS18570 at 125.952 kb on - strand, within HMPREF1058_RS18570 at 126.041 kb on + strand at 126.042 kb on - strand, within HMPREF1058_RS18570 at 126.045 kb on + strand, within HMPREF1058_RS18570 at 126.046 kb on - strand, within HMPREF1058_RS18570 at 126.382 kb on + strand, within HMPREF1058_RS18565 at 126.525 kb on - strand, within HMPREF1058_RS18565 at 126.525 kb on - strand, within HMPREF1058_RS18565 at 126.620 kb on + strand at 126.620 kb on + strand at 126.621 kb on - strand at 126.833 kb on - strand, within HMPREF1058_RS18560 at 126.925 kb on - strand, within HMPREF1058_RS18560 at 126.945 kb on + strand, within HMPREF1058_RS18560 at 126.985 kb on + strand, within HMPREF1058_RS18560 at 127.035 kb on - strand, within HMPREF1058_RS18560 at 127.085 kb on + strand, within HMPREF1058_RS18560 at 127.086 kb on - strand, within HMPREF1058_RS18560 at 127.107 kb on + strand, within HMPREF1058_RS18560 at 127.109 kb on + strand, within HMPREF1058_RS18560 at 127.110 kb on - strand, within HMPREF1058_RS18560 at 127.125 kb on - strand at 127.163 kb on + strand, within HMPREF1058_RS18560 at 127.319 kb on + strand at 127.322 kb on - strand at 127.359 kb on + strand at 127.359 kb on + strand at 127.397 kb on + strand at 127.411 kb on + strand at 127.412 kb on - strand at 127.419 kb on + strand at 127.419 kb on + strand at 127.430 kb on - strand at 127.509 kb on + strand at 127.553 kb on + strand, within HMPREF1058_RS18555 at 127.579 kb on + strand, within HMPREF1058_RS18555 at 127.600 kb on - strand, within HMPREF1058_RS18555 at 127.600 kb on - strand, within HMPREF1058_RS18555
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 125,220 + HMPREF1058_RS18575 0.24 -0.3 125,226 + HMPREF1058_RS18575 0.25 +1.5 125,312 - HMPREF1058_RS18575 0.39 -1.5 125,434 + HMPREF1058_RS18575 0.60 -1.4 125,434 + HMPREF1058_RS18575 0.60 -1.5 125,435 - HMPREF1058_RS18575 0.60 +0.4 125,435 - HMPREF1058_RS18575 0.60 -0.3 125,436 + HMPREF1058_RS18575 0.60 +0.9 125,437 - HMPREF1058_RS18575 0.60 +0.8 125,437 - HMPREF1058_RS18575 0.60 -0.2 125,523 - HMPREF1058_RS18575 0.75 +0.2 125,591 + HMPREF1058_RS18575 0.86 +0.8 125,720 - HMPREF1058_RS18570 0.11 +0.4 125,806 - HMPREF1058_RS18570 0.27 +0.3 125,806 - HMPREF1058_RS18570 0.27 -0.4 125,952 - HMPREF1058_RS18570 0.54 -0.4 126,041 + +0.2 126,042 - HMPREF1058_RS18570 0.71 +0.4 126,045 + HMPREF1058_RS18570 0.71 +0.4 126,046 - HMPREF1058_RS18570 0.71 -1.1 126,382 + HMPREF1058_RS18565 0.39 -1.6 126,525 - HMPREF1058_RS18565 0.70 +1.2 126,525 - HMPREF1058_RS18565 0.70 +0.3 126,620 + -0.4 126,620 + -0.2 126,621 - +1.2 126,833 - HMPREF1058_RS18560 0.24 -0.7 126,925 - HMPREF1058_RS18560 0.39 -2.3 126,945 + HMPREF1058_RS18560 0.42 +0.2 126,985 + HMPREF1058_RS18560 0.48 -1.5 127,035 - HMPREF1058_RS18560 0.56 +0.8 127,085 + HMPREF1058_RS18560 0.64 +0.2 127,086 - HMPREF1058_RS18560 0.65 -2.4 127,107 + HMPREF1058_RS18560 0.68 -1.5 127,109 + HMPREF1058_RS18560 0.68 -1.6 127,110 - HMPREF1058_RS18560 0.68 +0.3 127,125 - +2.5 127,163 + HMPREF1058_RS18560 0.77 -2.4 127,319 + +0.2 127,322 - +0.5 127,359 + -1.0 127,359 + -1.6 127,397 + -0.8 127,411 + -0.6 127,412 - -3.3 127,419 + +0.1 127,419 + +0.2 127,430 - -2.6 127,509 + +0.6 127,553 + HMPREF1058_RS18555 0.11 -3.3 127,579 + HMPREF1058_RS18555 0.13 -0.0 127,600 - HMPREF1058_RS18555 0.15 -4.2 127,600 - HMPREF1058_RS18555 0.15 -3.0
Or see this region's nucleotide sequence