Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18510 and HMPREF1058_RS21390 are separated by 218 nucleotides HMPREF1058_RS21390 and HMPREF1058_RS18505 are separated by 61 nucleotides HMPREF1058_RS18505 and HMPREF1058_RS18500 are separated by 61 nucleotides HMPREF1058_RS18500 and HMPREF1058_RS18495 overlap by 8 nucleotides
HMPREF1058_RS18510: HMPREF1058_RS18510 - DNA-binding protein, at 138,522 to 139,016
_RS18510
HMPREF1058_RS21390: HMPREF1058_RS21390 - smalltalk protein, at 139,235 to 139,345
_RS21390
HMPREF1058_RS18505: HMPREF1058_RS18505 - N-acetylmuramoyl-L-alanine amidase, at 139,407 to 139,925
_RS18505
HMPREF1058_RS18500: HMPREF1058_RS18500 - DUF86 domain-containing protein, at 139,987 to 140,379
_RS18500
HMPREF1058_RS18495: HMPREF1058_RS18495 - nucleotidyltransferase family protein, at 140,372 to 140,665
_RS18495
Position (kb) 139
140 Strain fitness (log2 ratio) -2
-1
0
1 at 138.508 kb on + strand at 138.531 kb on + strand at 138.537 kb on - strand at 138.537 kb on - strand at 138.585 kb on + strand, within HMPREF1058_RS18510 at 138.638 kb on + strand, within HMPREF1058_RS18510 at 138.808 kb on - strand, within HMPREF1058_RS18510 at 138.889 kb on + strand, within HMPREF1058_RS18510 at 139.045 kb on - strand at 139.080 kb on + strand at 139.229 kb on - strand at 139.712 kb on - strand, within HMPREF1058_RS18505 at 139.992 kb on + strand at 139.992 kb on + strand at 139.992 kb on + strand at 140.044 kb on + strand, within HMPREF1058_RS18500 at 140.045 kb on - strand, within HMPREF1058_RS18500 at 140.095 kb on + strand, within HMPREF1058_RS18500 at 140.095 kb on + strand, within HMPREF1058_RS18500 at 140.106 kb on - strand, within HMPREF1058_RS18500 at 140.106 kb on - strand, within HMPREF1058_RS18500 at 140.113 kb on + strand, within HMPREF1058_RS18500 at 140.113 kb on + strand, within HMPREF1058_RS18500 at 140.113 kb on + strand, within HMPREF1058_RS18500 at 140.113 kb on + strand, within HMPREF1058_RS18500 at 140.114 kb on - strand, within HMPREF1058_RS18500 at 140.114 kb on - strand, within HMPREF1058_RS18500 at 140.116 kb on + strand, within HMPREF1058_RS18500 at 140.116 kb on + strand, within HMPREF1058_RS18500 at 140.117 kb on - strand, within HMPREF1058_RS18500 at 140.117 kb on - strand, within HMPREF1058_RS18500 at 140.137 kb on + strand, within HMPREF1058_RS18500 at 140.241 kb on + strand, within HMPREF1058_RS18500 at 140.241 kb on + strand at 140.242 kb on - strand, within HMPREF1058_RS18500 at 140.351 kb on - strand at 140.353 kb on - strand at 140.379 kb on + strand at 140.379 kb on + strand at 140.380 kb on - strand at 140.380 kb on - strand at 140.383 kb on + strand at 140.438 kb on + strand, within HMPREF1058_RS18495 at 140.438 kb on + strand, within HMPREF1058_RS18495 at 140.605 kb on + strand, within HMPREF1058_RS18495 at 140.623 kb on + strand, within HMPREF1058_RS18495 at 140.625 kb on + strand, within HMPREF1058_RS18495 at 140.626 kb on - strand, within HMPREF1058_RS18495 at 140.680 kb on + strand at 140.695 kb on - strand at 140.699 kb on + strand at 140.753 kb on + strand at 140.755 kb on + strand at 140.756 kb on - strand at 140.831 kb on - strand at 140.852 kb on + strand at 140.871 kb on + strand at 140.910 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 138,508 + -0.1 138,531 + -0.7 138,537 - -1.1 138,537 - +0.0 138,585 + HMPREF1058_RS18510 0.13 -1.0 138,638 + HMPREF1058_RS18510 0.23 -0.1 138,808 - HMPREF1058_RS18510 0.58 +0.4 138,889 + HMPREF1058_RS18510 0.74 -0.0 139,045 - +0.4 139,080 + -0.2 139,229 - +0.5 139,712 - HMPREF1058_RS18505 0.59 +1.2 139,992 + -1.1 139,992 + -0.8 139,992 + +0.2 140,044 + HMPREF1058_RS18500 0.15 -2.1 140,045 - HMPREF1058_RS18500 0.15 +0.1 140,095 + HMPREF1058_RS18500 0.27 -1.1 140,095 + HMPREF1058_RS18500 0.27 -0.8 140,106 - HMPREF1058_RS18500 0.30 +0.4 140,106 - HMPREF1058_RS18500 0.30 +0.8 140,113 + HMPREF1058_RS18500 0.32 -1.4 140,113 + HMPREF1058_RS18500 0.32 -0.7 140,113 + HMPREF1058_RS18500 0.32 -0.3 140,113 + HMPREF1058_RS18500 0.32 -0.1 140,114 - HMPREF1058_RS18500 0.32 -0.2 140,114 - HMPREF1058_RS18500 0.32 +0.2 140,116 + HMPREF1058_RS18500 0.33 +0.5 140,116 + HMPREF1058_RS18500 0.33 +0.2 140,117 - HMPREF1058_RS18500 0.33 +0.7 140,117 - HMPREF1058_RS18500 0.33 +1.5 140,137 + HMPREF1058_RS18500 0.38 -0.3 140,241 + HMPREF1058_RS18500 0.65 -1.6 140,241 + +1.4 140,242 - HMPREF1058_RS18500 0.65 -0.7 140,351 - -0.6 140,353 - +0.5 140,379 + +1.6 140,379 + +1.4 140,380 - +0.7 140,380 - -0.1 140,383 + +0.4 140,438 + HMPREF1058_RS18495 0.22 -0.0 140,438 + HMPREF1058_RS18495 0.22 -0.6 140,605 + HMPREF1058_RS18495 0.79 -0.0 140,623 + HMPREF1058_RS18495 0.85 -0.6 140,625 + HMPREF1058_RS18495 0.86 -1.2 140,626 - HMPREF1058_RS18495 0.86 -0.4 140,680 + +0.1 140,695 - -0.5 140,699 + -0.2 140,753 + +0.3 140,755 + -2.1 140,756 - -0.4 140,831 - -0.4 140,852 + -0.4 140,871 + +0.9 140,910 + +0.0
Or see this region's nucleotide sequence