Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18015 and HMPREF1058_RS18010 are separated by 87 nucleotides HMPREF1058_RS18010 and HMPREF1058_RS18005 are separated by 167 nucleotides
HMPREF1058_RS18015: HMPREF1058_RS18015 - OprO/OprP family phosphate-selective porin, at 277,758 to 278,927
_RS18015
HMPREF1058_RS18010: HMPREF1058_RS18010 - L-asparaginase 2, at 279,015 to 280,073
_RS18010
HMPREF1058_RS18005: HMPREF1058_RS18005 - anaerobic C4-dicarboxylate transporter, at 280,241 to 281,539
_RS18005
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1 at 278.053 kb on + strand, within HMPREF1058_RS18015 at 278.061 kb on - strand, within HMPREF1058_RS18015 at 278.061 kb on - strand, within HMPREF1058_RS18015 at 278.062 kb on + strand, within HMPREF1058_RS18015 at 278.063 kb on - strand, within HMPREF1058_RS18015 at 278.116 kb on - strand, within HMPREF1058_RS18015 at 278.116 kb on - strand, within HMPREF1058_RS18015 at 278.116 kb on - strand, within HMPREF1058_RS18015 at 278.116 kb on - strand, within HMPREF1058_RS18015 at 278.117 kb on + strand, within HMPREF1058_RS18015 at 278.178 kb on - strand, within HMPREF1058_RS18015 at 278.213 kb on - strand, within HMPREF1058_RS18015 at 278.215 kb on + strand, within HMPREF1058_RS18015 at 278.304 kb on - strand, within HMPREF1058_RS18015 at 278.304 kb on - strand, within HMPREF1058_RS18015 at 278.325 kb on - strand, within HMPREF1058_RS18015 at 278.341 kb on + strand, within HMPREF1058_RS18015 at 278.341 kb on + strand, within HMPREF1058_RS18015 at 278.388 kb on + strand, within HMPREF1058_RS18015 at 278.406 kb on - strand, within HMPREF1058_RS18015 at 278.406 kb on - strand, within HMPREF1058_RS18015 at 278.406 kb on - strand, within HMPREF1058_RS18015 at 278.408 kb on - strand, within HMPREF1058_RS18015 at 278.413 kb on + strand, within HMPREF1058_RS18015 at 278.413 kb on + strand, within HMPREF1058_RS18015 at 278.414 kb on - strand at 278.414 kb on - strand, within HMPREF1058_RS18015 at 278.414 kb on - strand, within HMPREF1058_RS18015 at 278.442 kb on - strand, within HMPREF1058_RS18015 at 278.455 kb on - strand, within HMPREF1058_RS18015 at 278.465 kb on + strand, within HMPREF1058_RS18015 at 278.466 kb on - strand, within HMPREF1058_RS18015 at 278.466 kb on - strand, within HMPREF1058_RS18015 at 278.468 kb on - strand, within HMPREF1058_RS18015 at 278.512 kb on + strand, within HMPREF1058_RS18015 at 278.581 kb on - strand, within HMPREF1058_RS18015 at 278.592 kb on + strand, within HMPREF1058_RS18015 at 278.592 kb on + strand, within HMPREF1058_RS18015 at 278.593 kb on - strand, within HMPREF1058_RS18015 at 278.598 kb on - strand, within HMPREF1058_RS18015 at 278.598 kb on - strand, within HMPREF1058_RS18015 at 278.601 kb on + strand, within HMPREF1058_RS18015 at 278.601 kb on + strand, within HMPREF1058_RS18015 at 278.602 kb on - strand, within HMPREF1058_RS18015 at 278.602 kb on - strand, within HMPREF1058_RS18015 at 278.602 kb on - strand, within HMPREF1058_RS18015 at 278.771 kb on - strand, within HMPREF1058_RS18015 at 278.869 kb on - strand at 278.869 kb on - strand at 278.876 kb on - strand at 279.021 kb on + strand at 279.021 kb on + strand at 279.022 kb on - strand at 279.022 kb on - strand at 279.134 kb on + strand, within HMPREF1058_RS18010 at 279.278 kb on + strand, within HMPREF1058_RS18010 at 279.279 kb on - strand, within HMPREF1058_RS18010 at 279.297 kb on - strand, within HMPREF1058_RS18010 at 279.314 kb on + strand at 279.338 kb on - strand, within HMPREF1058_RS18010 at 279.344 kb on - strand, within HMPREF1058_RS18010 at 279.355 kb on - strand, within HMPREF1058_RS18010 at 279.405 kb on - strand, within HMPREF1058_RS18010 at 279.425 kb on + strand, within HMPREF1058_RS18010 at 279.451 kb on - strand, within HMPREF1058_RS18010 at 279.492 kb on + strand, within HMPREF1058_RS18010 at 279.493 kb on - strand, within HMPREF1058_RS18010 at 279.504 kb on - strand, within HMPREF1058_RS18010 at 279.594 kb on - strand, within HMPREF1058_RS18010 at 279.594 kb on - strand, within HMPREF1058_RS18010 at 279.606 kb on - strand, within HMPREF1058_RS18010 at 279.607 kb on + strand, within HMPREF1058_RS18010 at 279.608 kb on - strand, within HMPREF1058_RS18010 at 279.641 kb on + strand, within HMPREF1058_RS18010 at 279.666 kb on + strand, within HMPREF1058_RS18010 at 279.926 kb on + strand, within HMPREF1058_RS18010 at 279.928 kb on + strand, within HMPREF1058_RS18010 at 279.928 kb on + strand, within HMPREF1058_RS18010 at 279.986 kb on + strand at 279.987 kb on - strand at 279.987 kb on - strand at 279.987 kb on - strand at 279.987 kb on - strand at 279.992 kb on + strand at 279.996 kb on - strand at 280.030 kb on - strand at 280.107 kb on - strand at 280.154 kb on + strand at 280.154 kb on + strand at 280.156 kb on + strand at 280.156 kb on + strand at 280.156 kb on + strand at 280.157 kb on - strand at 280.158 kb on + strand at 280.158 kb on + strand at 280.158 kb on + strand at 280.158 kb on + strand at 280.158 kb on + strand at 280.159 kb on - strand at 280.159 kb on - strand at 280.159 kb on - strand at 280.159 kb on - strand at 280.159 kb on - strand at 280.159 kb on - strand at 280.162 kb on + strand at 280.162 kb on + strand at 280.162 kb on + strand at 280.162 kb on + strand at 280.163 kb on - strand at 280.163 kb on - strand at 280.163 kb on - strand at 280.177 kb on + strand at 280.178 kb on - strand at 280.276 kb on + strand at 280.277 kb on - strand at 280.385 kb on - strand, within HMPREF1058_RS18005 at 280.385 kb on - strand, within HMPREF1058_RS18005 at 280.394 kb on - strand, within HMPREF1058_RS18005 at 280.615 kb on + strand, within HMPREF1058_RS18005 at 280.641 kb on - strand, within HMPREF1058_RS18005 at 280.694 kb on - strand, within HMPREF1058_RS18005 at 280.769 kb on - strand, within HMPREF1058_RS18005 at 280.826 kb on + strand, within HMPREF1058_RS18005 at 280.853 kb on + strand, within HMPREF1058_RS18005
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 278,053 + HMPREF1058_RS18015 0.25 +0.9 278,061 - HMPREF1058_RS18015 0.26 -0.5 278,061 - HMPREF1058_RS18015 0.26 +0.1 278,062 + HMPREF1058_RS18015 0.26 -0.3 278,063 - HMPREF1058_RS18015 0.26 -0.0 278,116 - HMPREF1058_RS18015 0.31 -1.1 278,116 - HMPREF1058_RS18015 0.31 -0.1 278,116 - HMPREF1058_RS18015 0.31 +0.1 278,116 - HMPREF1058_RS18015 0.31 -0.1 278,117 + HMPREF1058_RS18015 0.31 -1.9 278,178 - HMPREF1058_RS18015 0.36 -1.4 278,213 - HMPREF1058_RS18015 0.39 +1.1 278,215 + HMPREF1058_RS18015 0.39 +0.3 278,304 - HMPREF1058_RS18015 0.47 -1.3 278,304 - HMPREF1058_RS18015 0.47 -2.0 278,325 - HMPREF1058_RS18015 0.48 -0.7 278,341 + HMPREF1058_RS18015 0.50 -0.4 278,341 + HMPREF1058_RS18015 0.50 +0.2 278,388 + HMPREF1058_RS18015 0.54 -1.2 278,406 - HMPREF1058_RS18015 0.55 -1.0 278,406 - HMPREF1058_RS18015 0.55 -0.2 278,406 - HMPREF1058_RS18015 0.55 -0.9 278,408 - HMPREF1058_RS18015 0.56 +1.2 278,413 + HMPREF1058_RS18015 0.56 -0.2 278,413 + HMPREF1058_RS18015 0.56 -0.6 278,414 - -1.8 278,414 - HMPREF1058_RS18015 0.56 +0.2 278,414 - HMPREF1058_RS18015 0.56 +0.0 278,442 - HMPREF1058_RS18015 0.58 -0.3 278,455 - HMPREF1058_RS18015 0.60 -1.2 278,465 + HMPREF1058_RS18015 0.60 -0.5 278,466 - HMPREF1058_RS18015 0.61 -1.0 278,466 - HMPREF1058_RS18015 0.61 -0.2 278,468 - HMPREF1058_RS18015 0.61 +0.1 278,512 + HMPREF1058_RS18015 0.64 +0.5 278,581 - HMPREF1058_RS18015 0.70 -0.8 278,592 + HMPREF1058_RS18015 0.71 -0.5 278,592 + HMPREF1058_RS18015 0.71 +0.7 278,593 - HMPREF1058_RS18015 0.71 -1.3 278,598 - HMPREF1058_RS18015 0.72 -0.4 278,598 - HMPREF1058_RS18015 0.72 -0.7 278,601 + HMPREF1058_RS18015 0.72 -0.1 278,601 + HMPREF1058_RS18015 0.72 +0.2 278,602 - HMPREF1058_RS18015 0.72 +0.7 278,602 - HMPREF1058_RS18015 0.72 -0.1 278,602 - HMPREF1058_RS18015 0.72 +0.2 278,771 - HMPREF1058_RS18015 0.87 +0.5 278,869 - +0.4 278,869 - +0.3 278,876 - +0.7 279,021 + -0.6 279,021 + -2.6 279,022 - -0.2 279,022 - +0.3 279,134 + HMPREF1058_RS18010 0.11 -0.1 279,278 + HMPREF1058_RS18010 0.25 +1.4 279,279 - HMPREF1058_RS18010 0.25 -0.5 279,297 - HMPREF1058_RS18010 0.27 +0.6 279,314 + -0.8 279,338 - HMPREF1058_RS18010 0.31 -1.5 279,344 - HMPREF1058_RS18010 0.31 +0.1 279,355 - HMPREF1058_RS18010 0.32 +1.5 279,405 - HMPREF1058_RS18010 0.37 +0.8 279,425 + HMPREF1058_RS18010 0.39 +0.2 279,451 - HMPREF1058_RS18010 0.41 -0.1 279,492 + HMPREF1058_RS18010 0.45 +1.5 279,493 - HMPREF1058_RS18010 0.45 +1.1 279,504 - HMPREF1058_RS18010 0.46 -0.1 279,594 - HMPREF1058_RS18010 0.55 -0.7 279,594 - HMPREF1058_RS18010 0.55 -0.1 279,606 - HMPREF1058_RS18010 0.56 -0.9 279,607 + HMPREF1058_RS18010 0.56 -0.0 279,608 - HMPREF1058_RS18010 0.56 +1.2 279,641 + HMPREF1058_RS18010 0.59 +1.3 279,666 + HMPREF1058_RS18010 0.61 -0.6 279,926 + HMPREF1058_RS18010 0.86 +0.5 279,928 + HMPREF1058_RS18010 0.86 +1.2 279,928 + HMPREF1058_RS18010 0.86 -1.0 279,986 + -0.0 279,987 - +0.2 279,987 - -0.2 279,987 - -1.8 279,987 - -1.1 279,992 + +0.2 279,996 - -1.1 280,030 - -0.2 280,107 - -0.7 280,154 + +0.4 280,154 + -2.6 280,156 + +0.2 280,156 + -0.2 280,156 + -1.5 280,157 - -0.1 280,158 + +1.0 280,158 + +0.0 280,158 + -0.4 280,158 + -0.3 280,158 + -0.5 280,159 - -2.2 280,159 - -1.0 280,159 - -1.0 280,159 - -0.1 280,159 - +0.6 280,159 - -0.3 280,162 + -0.3 280,162 + +0.2 280,162 + -1.2 280,162 + -0.3 280,163 - -0.2 280,163 - -0.8 280,163 - -0.8 280,177 + +1.0 280,178 - -0.3 280,276 + -2.0 280,277 - -1.8 280,385 - HMPREF1058_RS18005 0.11 -0.5 280,385 - HMPREF1058_RS18005 0.11 -0.6 280,394 - HMPREF1058_RS18005 0.12 -0.6 280,615 + HMPREF1058_RS18005 0.29 -0.4 280,641 - HMPREF1058_RS18005 0.31 -0.8 280,694 - HMPREF1058_RS18005 0.35 -0.9 280,769 - HMPREF1058_RS18005 0.41 -0.4 280,826 + HMPREF1058_RS18005 0.45 -0.2 280,853 + HMPREF1058_RS18005 0.47 -0.2
Or see this region's nucleotide sequence